Hg_chrom2_TN10mRNA_4393
Organism: Heterodera glycines Gene Locus: chr2:14739697-14743711 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.85 | 0.626 | 0.89 | 0.251 | 1.103 | 0.922 | 0.968 | 1.72 | 1.598 | 0.489 | 1.392 | 2.987 | 0.703 | 0.439 | 1.014 | 1.128 | 0.847 | 1.323 | 1.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4165
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.079
|
0.102
|
0.016
|
0.161
|
0.382
|
0.679
|
0.455
|
0.006
|
0.481
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007310
|
1.000
|
1.000
|
Hsc_gene_16878.t1
|
Hsc_gene_16878.t1
|
— | — |
KAH7727302.1 Protein F10G7.5 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.958|GO:0005575_0.918|GO:0110165_0.913|GO:0009987_0.911|GO:0071944_0.901|GO:0005886_0.899|GO:0016020_0.899|GO:0050896_0.804|GO:0051716_0.771
|
IPR011701+31-393+|IPR036259+4-457_13-231_277-460+|IPR052983+19-455+
|
— |
PF07690+31-393+Major_Facilitator_Superfamily
|
— |
PTHR43385+19-455+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
51953.720
|
7.737
|
6.500
|
12.258
|
18.710
|
34.194
|
65.806
|
7.312
|
4.946
|
48.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
234.571
|
36.429
|
100.570
|
127.666
|
314.065
|
347.305
|
252.452
|
124.017
|
6.556
|
532.892
|
307.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.231
|
1.672
|
0.455
|
1.266
|
— |
-0.459
|
-1.597
|
1.161
|
-6.464
|
4.518
|
— | — | — |
No JSON data available for plots.