Hg_chrom2_TN10mRNA_4396
Organism: Heterodera glycines Gene Locus: chr2:14845213-14847003 Feature type: polypeptideProtein Sequence
Length: 208
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.335 | 1.901 | 2.185 | 0.995 | 1.122 | 0.986 | 0.515 | 2.404 | 1.923 | 0.975 | 0.583 | 0.566 | 0.935 | 1.479 | 0.491 | 1.168 | 0.709 | 0.51 | 0.74 | 0.99 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4168
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_4396
|
21-pJ2_J3
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-20
|
0.991
|
1.000
|
0.000
|
0.000
|
0.655
|
0.187
|
0.016
|
0.616
|
0.345
|
0.212
|
0.080
|
0.029
|
0.220
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000794
|
3.000
|
3.000
|
Hsc_gene_11551.t1;Hsc_gene_5517.t1;Hsc_gene_5517.t2
|
— | — |
Q9XF92.1 Brassinosteroid-responsive RING protein 1 [Arabidopsis thaliana]
|
GFP94159.1 E3 ubiquitin-protein ligase rha1b [Phtheirospermum japonicum]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0003674_0.640|GO:0008152_0.623|GO:0005575_0.596|GO:0110165_0.593|GO:0043170_0.578|GO:0009987_0.575|GO:0003824_0.556|GO:0044238_0.532|GO:0140096_0.507
|
IPR001841+35-81_37-80_37-81+|IPR013083+16-90+
|
SM00184+37-80+
|
PF13639+35-81+Ring_finger_domain
|
— |
PTHR45676+32-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-208
|
1.000
|
1-90
|
5d0k_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
23583.780
|
4.139
|
-21.000
|
29.808
|
12.500
|
54.327
|
45.673
|
11.058
|
18.750
|
53.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
20.802
|
1.974
|
2.936
|
55.773
|
55.169
|
20.055
|
11.973
|
15.001
|
0.000
|
29.926
|
17.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.675
|
4.358
|
— |
-1.447
|
— | — | — | — |
6.659
|
— | — | — |