Hg_chrom2_TN10mRNA_4398
Organism: Heterodera glycines Gene Locus: chr2:14850932-14856451 Feature type: polypeptideProtein Sequence
Length: 359
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.749 | 0.658 | 0.576 | 0.696 | 1.928 | 1.36 | 1.811 | 1.3 | 0.602 | 0.169 | 1.802 | 0.851 | 1.232 | 1.08 | 1.433 | 1.279 | 0.549 | 0.429 | 0.983 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_4398
|
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.938
|
1.000
|
0.000
|
0.000
|
0.444
|
0.263
|
0.002
|
0.556
|
0.472
|
0.182
|
0.188
|
0.051
|
0.096
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001896
|
3.000
|
1.000
|
Hsc_gene_22764.t1
|
— | — |
Q9LQX2.1 E3 ubiquitin-protein ligase MPSR1 [Arabidopsis thaliana]
|
XP_039053582.1 E3 ubiquitin-protein ligase MPSR1-like [Hibiscus syriacus];KAE8655772.1 putative Ribosomal protein L34e superfamily protein [Hibiscus syriacus]
|
No
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.899|GO:0003674_0.701|GO:0005575_0.660|GO:0110165_0.647|GO:0009987_0.624|GO:0008152_0.623|GO:0043170_0.604|GO:0044238_0.581|GO:0016020_0.533|GO:0003824_0.529|GO:0065007_0.528|GO:0140096_0.526|GO:0016740_0.514|GO:0016746_0.514|GO:0019538_0.512|GO:0004842_0.509|GO:0016755_0.509|GO:0019787_0.509
|
IPR001841+112-155_114-154_114-155+|IPR013083+78-159+
|
SM00184+114-154+
|
PF13639+112-155+Ring_finger_domain
|
— |
PTHR45977+26-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-318;359-359
|
1.000
|
319-358
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
38772.600
|
6.681
|
1.500
|
17.827
|
10.585
|
50.696
|
49.304
|
10.028
|
7.799
|
57.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
121.944
|
3.702
|
21.072
|
15.980
|
2.528
|
1.283
|
1.828
|
2.097
|
613.051
|
55.532
|
294.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.286
|
1.977
|
— |
-2.710
|
— | — | — | — |
3.475
|
-5.078
|
-3.996
|
— | — |