Hg_chrom2_TN10mRNA_4399
Organism: Heterodera glycines Gene Locus: chr2:14859557-14867728 Feature type: polypeptideProtein Sequence
Length: 551
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 2.364 | 0.66 | 0.751 | 0.998 | 2.653 | 0.411 | 1.361 | 1.654 | 0.907 | 0.522 | 1.174 | 0.504 | 0.977 | 1.482 | 1.556 | 0.863 | 0.55 | 0.558 | 0.267 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4171
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_4399
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
— | — | — |
5-26
|
0.854
|
1-21
|
0.995
|
1.000
|
0.000
|
0.000
|
0.502
|
0.153
|
0.002
|
0.716
|
0.129
|
0.135
|
0.100
|
0.032
|
0.098
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000795
|
6.000
|
0.000
|
0.000
|
— | — |
Q9LF64.1 RING-H2 finger protein ATL52 [Arabidopsis thaliana]
|
XP_050218258.1 RING-H2 finger protein ATL52-like [Mercurialis annua]
|
KAK6135008
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0003674_0.703|GO:0005575_0.667|GO:0110165_0.660|GO:0009987_0.653|GO:0008152_0.650|GO:0043170_0.650|GO:0044238_0.599|GO:0003824_0.554|GO:0140096_0.554|GO:0016020_0.548|GO:0019538_0.545|GO:0016740_0.539|GO:0016746_0.539|GO:0016755_0.539|GO:0019787_0.539|GO:0005622_0.538|GO:0004842_0.535
|
IPR001841+34-82_35-81_35-82_376-423_378-422_378-423+|IPR013083+14-89_356-432+|IPR051834+101-426+
|
SM00184+35-81_378-422+|SM01197+374-431+
|
PF13639+34-82_376-423+Ring_finger_domain
|
— |
PTHR45931+101-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-387
|
2.000
|
1-86;388-551
|
5d0m_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
61983.910
|
8.376
|
13.500
|
23.049
|
6.171
|
59.710
|
40.290
|
13.430
|
9.619
|
50.635
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
423.865
|
0.384
|
2.870
|
53.454
|
24.943
|
2.851
|
1.925
|
5.395
|
77.382
|
1761.941
|
1039.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.668
|
6.989
|
4.339
|
-1.137
|
-3.108
|
— | — | — |
-4.616
|
— |
-5.730
|
— | — |