Hg_chrom2_TN10mRNA_4402
Organism: Heterodera glycines Gene Locus: chr2:14860228-14867611 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 2.403 | 0.704 | 0.636 | 0.953 | 2.744 | 0.439 | 1.476 | 1.394 | 0.972 | 0.475 | 1.194 | 0.461 | 0.887 | 1.506 | 1.555 | 0.817 | 0.615 | 0.71 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4171
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_4402
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.406
|
0.291
|
0.009
|
0.615
|
0.157
|
0.212
|
0.151
|
0.059
|
0.148
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000795
|
6.000
|
0.000
|
0.000
|
— | — |
Q9LF64.1 RING-H2 finger protein ATL52 [Arabidopsis thaliana]
|
KAJ6703035.1 RING-H2 FINGER PROTEIN ATL33 [Salix viminalis]
|
KAF9681845
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.937|GO:0003674_0.685|GO:0005575_0.681|GO:0110165_0.672|GO:0009987_0.653|GO:0008152_0.651|GO:0043170_0.651|GO:0044238_0.611|GO:0005622_0.551|GO:0019538_0.545|GO:0016020_0.534|GO:0003824_0.533|GO:0140096_0.533|GO:0016740_0.514|GO:0016746_0.514|GO:0016755_0.514|GO:0019787_0.514|GO:0004842_0.510
|
IPR001841+11-47_20-48_342-389_344-388_344-389+|IPR013083+4-54_322-398+|IPR024766+14-48+|IPR051834+67-392+
|
SM00184+11-47_344-388+|SM01197+340-397+
|
PF12678+14-48+RING-H2_zinc_finger_domain|PF13639+342-389+Ring_finger_domain
|
— |
PTHR45931+67-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;52-348
|
2.000
|
8-51;349-542
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
61025.580
|
8.355
|
13.000
|
23.063
|
6.642
|
59.963
|
40.037
|
13.469
|
9.594
|
50.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
423.865
|
0.384
|
2.870
|
53.454
|
24.943
|
2.851
|
1.925
|
5.395
|
77.382
|
1761.941
|
1039.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.668
|
6.989
|
4.339
|
-1.137
|
-3.108
|
— | — | — |
-4.616
|
— |
-5.730
|
— | — |
No JSON data available for plots.