Hg_chrom2_TN10mRNA_4403
Organism: Heterodera glycines Gene Locus: chr2:14868444-14872541 Feature type: polypeptideProtein Sequence
Length: 244
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 2.478 | 0.522 | 1.413 | 0.615 | 1.366 | 0.976 | 0.82 | 0.638 | 0.609 | 0.745 | 0.482 | 1.138 | 0.394 | 1.589 | 2.049 | 1.142 | 0.621 | 1.892 | 0.723 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4172
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_4403
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-18
|
0.936
|
1.000
|
0.000
|
0.000
|
0.600
|
0.264
|
0.002
|
0.490
|
0.367
|
0.095
|
0.169
|
0.096
|
0.076
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001896
|
3.000
|
1.000
|
Hsc_gene_22764.t1
|
— | — |
Q9LQX2.1 E3 ubiquitin-protein ligase MPSR1 [Arabidopsis thaliana]
|
KAK6945016.1 Zinc finger, RING-type [Dillenia turbinata]
|
XP_021299647
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.867|GO:0005575_0.687|GO:0110165_0.682|GO:0003674_0.656|GO:0009987_0.637|GO:0008152_0.596|GO:0043170_0.596|GO:0065007_0.565|GO:0016020_0.539|GO:0044238_0.539|GO:0005622_0.538|GO:0050789_0.531|GO:0003824_0.519|GO:0140096_0.519|GO:0016740_0.509|GO:0016746_0.509|GO:0016755_0.509|GO:0019787_0.509|GO:0004842_0.508
|
IPR001841+110-153_112-152_112-153+|IPR013083+76-157+
|
SM00184+112-152+
|
PF13639+110-153+Ring_finger_domain
|
— |
PTHR45977+80-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
53-114
|
2.000
|
1-52;115-244
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
27021.690
|
9.994
|
17.000
|
20.902
|
10.656
|
58.197
|
41.803
|
14.344
|
6.557
|
59.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
53.768
|
0.901
|
93.132
|
53.028
|
7.076
|
0.251
|
0.407
|
1.795
|
186.902
|
36.337
|
100.865
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.452
|
5.731
|
-0.702
|
-2.935
|
-4.804
|
— | — | — | — | — | — | — | — |