Hg_chrom2_TN10mRNA_4404
Organism: Heterodera glycines Gene Locus: chr2:14873847-14875942 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 2.144 | 1.289 | 0.489 | 0.887 | 1.728 | 0.675 | 1.241 | 1.34 | 0.671 | 0.43 | 0.834 | 1.182 | 0.887 | 1.303 | 0.963 | 1.337 | 1.075 | 0.273 | 0.939 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4173
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_4404
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.538
|
0.018
|
0.580
|
0.302
|
0.131
|
0.242
|
0.119
|
0.086
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001169
|
3.000
|
2.000
|
Hsc_gene_22761.t1;Hsc_gene_22761.t2
|
— | — |
Q9FIR0.1 RING-H2 finger protein ATL30 [Arabidopsis thaliana]
|
XP_008678937.1 RING-H2 finger protein ATL72 [Zea mays];AQK54258.1 Putative RING zinc finger domain superfamily protein [Zea mays]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016567|GO:0016740
|
GO:0008150_0.915|GO:0003674_0.709|GO:0005575_0.657|GO:0110165_0.649|GO:0008152_0.645|GO:0043170_0.618|GO:0009987_0.613|GO:0044238_0.600|GO:0003824_0.577|GO:0019538_0.535|GO:0016740_0.523|GO:0140096_0.521|GO:0016746_0.509|GO:0016755_0.503|GO:0019787_0.503|GO:0004842_0.501
|
IPR001841+65-91_68-91+|IPR013083+41-112+|IPR044600+67-115+
|
— |
PF13639+65-91+Ring_finger_domain
|
— |
PTHR46913+67-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-144
|
1.000
|
145-282
|
2ect_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
31666.880
|
5.152
|
-5.500
|
24.113
|
10.284
|
54.965
|
45.035
|
11.702
|
12.411
|
56.028
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
15.954
|
0.000
|
1.058
|
45.529
|
12.499
|
1.266
|
0.101
|
0.839
|
5.529
|
42.670
|
26.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
9.937
|
5.581
|
-1.891
|
-3.298
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.