Hg_chrom2_TN10mRNA_4407
Organism: Heterodera glycines Gene Locus: chr2:14879766-14882825 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 1.833 | 1.051 | 0.483 | 1.022 | 1.662 | 0.73 | 0.963 | 1.518 | 0.592 | 1.035 | 0.824 | 0.681 | 0.64 | 1.644 | 1.626 | 1.062 | 0.902 | 0.269 | 0.67 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4176
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_4407
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKIWKQIGSFLGDKKQKA
|
— | — |
23-59
|
0.853
|
— | — |
0.000
|
— | — |
0.384
|
0.155
|
0.026
|
0.691
|
0.151
|
0.151
|
0.239
|
0.035
|
0.311
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001169
|
3.000
|
2.000
|
Hsc_gene_22761.t1;Hsc_gene_22761.t2
|
— | — |
Q9Y252.1 E3 ubiquitin-protein ligase RNF6 [Homo sapiens]
|
XP_020576856.1 RING-H2 finger protein ATL40-like [Phalaenopsis equestris]
|
No
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0005575_0.709|GO:0110165_0.697|GO:0009987_0.693|GO:0003674_0.690|GO:0008152_0.635|GO:0043170_0.635|GO:0044238_0.591|GO:0005622_0.586|GO:0065007_0.569|GO:0016020_0.568|GO:0050789_0.552|GO:0050794_0.536|GO:0003824_0.535|GO:0019538_0.533|GO:0140096_0.522|GO:0016740_0.516|GO:0016746_0.506|GO:0016755_0.504|GO:0019787_0.504|GO:0004842_0.503|GO:0043226_0.503
|
IPR001841+372-412_373-411_373-412+|IPR013083+357-428+
|
SM00184+373-411+
|
PF13639+372-412+Ring_finger_domain
|
— |
PTHR47662+356-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-364
|
1.000
|
365-571
|
2l0b_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
64035.060
|
9.827
|
22.500
|
28.722
|
7.005
|
60.946
|
39.054
|
16.813
|
11.909
|
52.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
182.932
|
0.608
|
0.453
|
91.090
|
33.147
|
1.750
|
1.921
|
1.387
|
103.659
|
673.702
|
429.397
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.081
|
7.807
|
-1.484
|
-4.229
|
— | — | — | — | — |
-4.260
|
— | — |
No JSON data available for plots.