Hg_chrom2_TN10mRNA_4410
Organism: Heterodera glycines Gene Locus: chr2:14897555-14902160 Feature type: polypeptideProtein Sequence
Length: 417
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 2.287 | 1.57 | 0.496 | 1.519 | 0.984 | 0.628 | 2.158 | 1.279 | 1.069 | 0.182 | 0.423 | 0.6 | 1.568 | 0.538 | 1.37 | 0.708 | 0.872 | 1.107 | 0.846 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4179
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_4410
|
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-20
|
0.995
|
1.000
|
0.000
|
0.000
|
0.541
|
0.167
|
0.009
|
0.685
|
0.260
|
0.204
|
0.129
|
0.039
|
0.162
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001170
|
1.000
|
4.000
|
Hsc_gene_11553.t1;Hsc_gene_11553.t2;Hsc_gene_11553.t3;Hsc_gene_11553.t4
|
— | — |
Q9XF92.1 Brassinosteroid-responsive RING protein 1 [Arabidopsis thaliana]
|
XP_047318644.1 RING-H2 finger protein ATL40-like [Impatiens glandulifera]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0003674_0.638|GO:0005575_0.624|GO:0110165_0.624|GO:0008152_0.601|GO:0009987_0.587|GO:0043170_0.565|GO:0003824_0.527|GO:0044238_0.505
|
IPR001841+35-81_37-80_37-81+|IPR013083+17-90+
|
SM00184+37-80+
|
PF13639+35-81+Ring_finger_domain
|
— |
PTHR46539+32-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-417
|
1.000
|
1-90
|
5d0k_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
46217.860
|
3.938
|
-49.000
|
25.899
|
10.791
|
53.477
|
46.523
|
8.153
|
17.746
|
58.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
pink
|
343.915
|
59.800
|
149.678
|
153.191
|
130.083
|
84.960
|
45.572
|
411.774
|
125.773
|
1022.153
|
637.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.095
|
1.221
|
— | — |
-0.601
|
-0.890
|
2.171
|
-3.034
|
— | — | — | — | — |