Hg_chrom2_TN10mRNA_4412
Organism: Heterodera glycines Gene Locus: chr2:14909898-14910504 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 1.738 | 1.045 | 0.396 | 1.245 | 0.884 | 0.889 | 0.0 | 1.405 | 0.621 | 1.48 | 3.719 | 1.277 | 0.995 | 0.938 | 0.575 | 1.131 | 0.784 | 0.884 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4181
|
— | — |
1.667
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
4.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.450
|
0.313
|
0.399
|
0.514
|
0.087
|
0.213
|
0.420
|
0.006
|
0.453
|
0.369
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000392
|
2.000
|
6.000
|
Hsc_gene_11744.t1;Hsc_gene_12282.t1;Hsc_gene_12282.t2;Hsc_gene_21946.t1;Hsc_gene_2976.t1;Hsc_gene_809.t1
|
Hsc_gene_11744.t1;Hsc_gene_19617.t1;Hsc_gene_21946.t1;Hsc_gene_2976.t1
|
— | — |
KAI3419612.1 hypothetical protein GPALN_004048 [Globodera pallida]
|
NBK99779
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-174
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
19734.660
|
8.435
|
2.000
|
27.586
|
8.621
|
49.425
|
50.575
|
14.368
|
13.218
|
48.851
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
38.333
|
1.995
|
4.821
|
4.228
|
2.180
|
1.980
|
1.224
|
2.237
|
8.612
|
154.249
|
91.833
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-4.307
|
— |
-5.942
|
— | — |
No JSON data available for plots.