Hg_chrom2_TN10mRNA_4413
Organism: Heterodera glycines Gene Locus: chr2:14930439-14933099 Feature type: polypeptideProtein Sequence
Length: 248
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 1.688 | 1.979 | 0.834 | 1.344 | 1.137 | 0.624 | 1.815 | 1.703 | 1.035 | 0.978 | 0.474 | 0.56 | 1.086 | 0.329 | 1.613 | 0.727 | 0.428 | 0.62 | 0.712 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4182
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.983
|
1.000
|
0.000
|
0.000
|
0.254
|
0.311
|
0.006
|
0.558
|
0.220
|
0.258
|
0.243
|
0.021
|
0.389
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000794
|
3.000
|
3.000
|
Hsc_gene_11551.t1;Hsc_gene_5517.t1;Hsc_gene_5517.t2
|
— | — |
Q9XF92.1 Brassinosteroid-responsive RING protein 1 [Arabidopsis thaliana]
|
KAJ6829845.1 putative RING-H2 zinc finger protein RHA1a [Iris pallida]
|
CAK7323676
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0009987_0.728|GO:0003674_0.644|GO:0005575_0.634|GO:0110165_0.634|GO:0065007_0.610|GO:0050789_0.605|GO:0050794_0.590|GO:0008152_0.568|GO:0043170_0.568|GO:0050896_0.564|GO:0044238_0.536|GO:0005622_0.522|GO:0019538_0.506
|
IPR001841+56-102_58-101_58-102+|IPR013083+35-108+
|
SM00184+58-101+
|
PF13639+56-102+Ring_finger_domain
|
— |
PTHR46539+51-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-248
|
1.000
|
1-102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
27476.920
|
4.201
|
-22.500
|
30.645
|
8.871
|
58.065
|
41.935
|
11.694
|
18.952
|
54.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
210.664
|
5.972
|
5.276
|
59.619
|
17.626
|
7.022
|
3.950
|
5.112
|
2.073
|
880.883
|
504.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.184
|
3.612
|
-1.783
|
-1.316
|
— | — | — |
-5.251
|
5.187
|
— | — | — |