Hg_chrom2_TN10mRNA_4414
Organism: Heterodera glycines Gene Locus: chr2:14959211-14972098 Feature type: polypeptideProtein Sequence
Length: 601
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 2.515 | 0.726 | 0.746 | 1.054 | 2.389 | 0.436 | 1.331 | 1.59 | 0.944 | 0.454 | 1.175 | 0.508 | 0.864 | 1.358 | 1.664 | 0.846 | 0.58 | 0.768 | 0.343 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4183
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm
|
chloroplast
|
— | — | — |
5-26
|
0.854
|
1-21
|
0.995
|
1.000
|
0.000
|
0.000
|
0.465
|
0.236
|
0.002
|
0.688
|
0.254
|
0.160
|
0.131
|
0.056
|
0.087
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000795
|
6.000
|
0.000
|
0.000
|
— | — |
Q9LF64.1 RING-H2 finger protein ATL52 [Arabidopsis thaliana]
|
KAJ6703035.1 RING-H2 FINGER PROTEIN ATL33 [Salix viminalis]
|
KAI3774603
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016567|GO:0016740
|
GO:0008150_0.938|GO:0009987_0.701|GO:0005575_0.690|GO:0110165_0.683|GO:0003674_0.648|GO:0005622_0.595|GO:0008152_0.587|GO:0043170_0.587|GO:0065007_0.572|GO:0044238_0.569|GO:0016020_0.563|GO:0050789_0.563|GO:0050794_0.551|GO:0050896_0.510
|
IPR001841+34-82_35-81_35-82_401-448_403-447_403-448+|IPR013083+14-90_386-462+|IPR044602+393-457+
|
SM00184+35-81_403-447+|SM01197+399-456+
|
PF13639+34-82_401-448+Ring_finger_domain
|
— |
PTHR46905+393-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
83-409
|
2.000
|
1-82;410-601
|
5ulk_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
67456.600
|
6.913
|
4.000
|
22.629
|
6.656
|
59.567
|
40.433
|
12.313
|
10.316
|
51.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
382.920
|
7.791
|
17.345
|
57.517
|
23.546
|
6.780
|
2.635
|
6.781
|
113.788
|
1544.038
|
931.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
2.746
|
1.843
|
-1.317
|
-1.784
|
-1.355
|
— |
-1.222
|
-3.880
|
— |
-5.782
|
— | — |