Hg_chrom2_TN10mRNA_4420
Organism: Heterodera glycines Gene Locus: chr2:15004946-15007050 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.799 | 1.607 | 0.762 | 1.289 | 1.275 | 0.855 | 0.829 | 1.228 | 0.971 | 0.837 | 3.25 | 1.995 | 0.425 | 1.353 | 1.105 | 0.634 | 0.335 | 0.0 | 0.162 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4188
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.857
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.311
|
0.059
|
0.356
|
0.080
|
0.299
|
0.129
|
0.029
|
0.854
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007313
|
1.000
|
1.000
|
Hsc_gene_25132.t1
|
Hsc_gene_25132.t1
|
— |
Q9AWK2.1 Probable calcium-binding protein CML11 [Oryza sativa Japonica Group]
|
KAK5965618.1 Calmodulin striated muscle [Trichostrongylus colubriformis]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.827|GO:0110165_0.816|GO:0005622_0.749|GO:0005737_0.687|GO:0008150_0.641|GO:0016020_0.628|GO:0043226_0.510
|
IPR002048+34-69_38-66_38-99_38-100_70-100_74-102_103-138_107-135_108-169_139-174_143-171+|IPR011992+38-170+|IPR018247+47-59_116-128_152-164+
|
SM00054+38-66_74-102_107-135_143-171+
|
PF13499+38-99_108-169+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000527+28-171+Calmodulin-3
|
PTHR10891+31-96+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-181
|
1.000
|
1-162
|
8pb1_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
20553.000
|
4.702
|
-6.500
|
30.387
|
9.392
|
54.696
|
45.304
|
13.812
|
16.575
|
47.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
612.267
|
113.423
|
898.196
|
473.237
|
622.131
|
268.545
|
316.180
|
967.944
|
491.042
|
938.017
|
746.456
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.757
|
1.923
|
-0.817
|
0.363
|
-1.197
|
0.245
|
1.746
|
-1.472
|
— | — | — | — | — |
No JSON data available for plots.