Hg_chrom2_TN10mRNA_4423
Organism: Heterodera glycines Gene Locus: chr2:15016434-15030172 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.073 | 1.119 | 0.152 | 1.832 | 1.634 | 0.34 | 0.549 | 1.465 | 1.277 | 1.365 | 2.198 | 0.855 | 0.676 | 1.525 | 1.319 | 0.576 | 0.566 | 0.507 | 0.388 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4191
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRRK,KRISLGQIHVPQQRKEMK,RRQYLREQRDKLLKKKSQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.130
|
0.012
|
0.844
|
0.075
|
0.243
|
0.294
|
0.144
|
0.181
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003449
|
1.000
|
2.000
|
Hsc_gene_25125.t1;Hsc_gene_25126.t1
|
— | — |
Q95Y36.1 Cilia- and flagella-associated protein 36 [Caenorhabditis elegans]
|
KAF7637793.1 ARL2_Bind_BART domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.943|GO:0110165_0.943|GO:0016020_0.871|GO:0043226_0.870|GO:0043227_0.797|GO:0032991_0.759|GO:0005886_0.698|GO:0071944_0.698|GO:0005622_0.618|GO:0042995_0.613|GO:0098590_0.613|GO:0120025_0.613|GO:0005929_0.582|GO:0030990_0.582|GO:0043229_0.564|GO:0035869_0.540
|
IPR023379+12-133+|IPR038888+11-452+|IPR042541+8-145+
|
— |
PF11527+12-133+The_ARF-like_2_binding_protein_BART
|
— |
PTHR21532+11-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-455
|
1.000
|
1-227
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
52600.780
|
6.409
|
-0.500
|
34.725
|
6.154
|
58.462
|
41.538
|
17.582
|
17.143
|
40.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
691.602
|
1988.147
|
419.782
|
75.676
|
23.421
|
72.617
|
19.338
|
268.727
|
220.377
|
1785.087
|
1114.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.474
|
-4.852
|
-2.362
|
-1.726
|
1.649
|
-1.901
|
1.792
|
-3.661
|
— | — |
-5.652
|
— | — |
No JSON data available for plots.