Hg_chrom2_TN10mRNA_4425
Organism: Heterodera glycines Gene Locus: chr2:15058169-15060619 Feature type: polypeptideProtein Sequence
Length: 460
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 1.719 | 0.988 | 0.75 | 0.652 | 0.78 | 0.673 | 2.174 | 1.304 | 1.293 | 0.395 | 1.407 | 1.812 | 0.627 | 1.198 | 1.335 | 0.677 | 1.021 | 1.171 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4193
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
67-116
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.467
|
0.218
|
0.027
|
0.459
|
0.171
|
0.114
|
0.105
|
0.085
|
0.080
|
0.299
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O46419.1 Lipoyl amidotransferase LIPT1, mitochondrial [Bos taurus]
|
ADW77537.1 ran-binding protein [Heterodera glycines]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0009249|GO:0036211
|
GO:0008150_0.682|GO:0005575_0.651|GO:0110165_0.644|GO:0005622_0.561|GO:0005737_0.526
|
IPR001870+255-451+|IPR003877+328-450_331-448+|IPR004143+2-43+|IPR004562+1-70+|IPR013320+271-450+|IPR043136+266-458+|IPR044736+316-447+|IPR045864+1-87_2-44+
|
SM00449+328-450+
|
PF00622+331-448+SPRY_domain|PF21948+2-43+Lipoyl_protein_ligase_A/B_catalytic_domain
|
— |
PTHR12561+1-70+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-460
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
51374.310
|
7.031
|
6.000
|
22.174
|
14.130
|
46.087
|
53.913
|
12.826
|
9.348
|
52.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1079.191
|
300.990
|
799.478
|
642.886
|
491.003
|
661.896
|
657.197
|
1936.718
|
453.829
|
2322.278
|
1521.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.182
|
0.958
|
-0.207
|
-0.421
|
0.445
|
— |
1.448
|
-1.417
|
-2.449
|
— |
-1.988
|
— | — |
No JSON data available for plots.