Hg_chrom2_TN10mRNA_4432
Organism: Heterodera glycines Gene Locus: chr2:15107003-15109033 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.094 | 0.749 | 1.623 | 0.686 | 1.659 | 0.63 | 0.588 | 1.307 | 1.033 | 1.248 | 2.768 | 1.144 | 1.131 | 0.84 | 1.008 | 0.964 | 0.891 | 0.452 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.299
|
0.333
|
0.113
|
0.867
|
0.187
|
0.143
|
0.336
|
0.067
|
0.314
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007320
|
1.000
|
1.000
|
Hsc_gene_25120.t1
|
Hsc_gene_25120.t1
|
— |
P26932.2 Calponin-1 [Gallus gallus]
|
KAF7637798.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.833|GO:0005575_0.744|GO:0110165_0.743|GO:0009987_0.707|GO:0005622_0.640|GO:0003674_0.576|GO:0005488_0.506
|
IPR000557+143-162_143-168_144-167+|IPR001715+1-96_1-101_13-101+|IPR003096+14-29_52-68_68-83_89-103_144-159+|IPR036872+2-149_14-153+|IPR050606+14-167+
|
SM00033+1-96+
|
PF00307+13-101+Calponin_homology_(CH)_domain|PF00402+144-167+Calponin_family_repeat
|
— |
PTHR47385+14-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-170
|
1h67_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
19035.210
|
8.870
|
8.000
|
21.765
|
8.824
|
45.882
|
54.118
|
13.529
|
8.235
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
456.401
|
130.613
|
52.062
|
35.783
|
243.858
|
1264.758
|
283.452
|
1277.663
|
170.497
|
635.811
|
436.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.557
|
-2.005
|
-0.431
|
2.736
|
2.391
|
-2.147
|
— |
-2.029
|
— | — | — | — | — |
No JSON data available for plots.