Hg_chrom2_TN10mRNA_4433
Organism: Heterodera glycines Gene Locus: chr2:15111487-15113519 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.184 | 0.599 | 0.929 | 0.349 | 0.844 | 0.428 | 0.749 | 3.127 | 1.983 | 0.953 | 1.585 | 2.412 | 0.576 | 0.55 | 0.941 | 0.491 | 0.907 | 0.921 | 1.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4201
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
11-32
|
0.946
|
— | — | — | — |
0.000
|
— | — |
0.094
|
0.070
|
0.012
|
0.081
|
0.334
|
0.148
|
0.178
|
0.021
|
0.745
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001171
|
2.000
|
3.000
|
Hsc_gene_15255.t1;Hsc_gene_25112.t1;Hsc_gene_25976.t1
|
Hsc_gene_25112.t1
|
— |
Q19992.1 Serpentine receptor class delta-1 [Caenorhabditis elegans]
|
KAI1705741.1 serpentine type 7TM GPCR chemoreceptor srd domain-containing protein [Ditylenchus destructor]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019421+3-301+
|
— |
PF10317+3-301+Serpentine_type_7TM_GPCR_chemoreceptor_Srd
|
— |
PTHR22943+2-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
38526.500
|
9.367
|
14.500
|
15.868
|
15.868
|
33.832
|
66.168
|
10.479
|
5.389
|
38.323
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
13.772
|
4.923
|
9.757
|
2.230
|
1.598
|
0.245
|
0.201
|
0.408
|
5.157
|
49.122
|
30.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-2.015
|
— | — | — | — | — | — | — |
-4.455
|
— | — |
No JSON data available for plots.