SCN Proteipedia

Hg_chrom2_TN10mRNA_4440

Organism: Heterodera glycines Gene Locus: chr2:15183064-15195191 Feature type: polypeptide

Protein Sequence

Length: 1,002 (Signal peptide: 1-21)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.905	1.485	0.98	0.379	0.931	1.51	0.701	1.447	1.22	1.308	0.65	1.115	1.636	0.844	1.039	0.941	0.949	0.771	1.305	0.939	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4207	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.964

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	—	KRRR,KLPIK	—	—	—	—	1-21	0.996	1.000	0.000	0.000	0.113	0.128	0.018	0.400	0.227	0.419	0.282	0.015	0.271	0.768

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003451	2.000	1.000	Hsc_gene_25116.t1	Hsc_gene_16886.t1;Hsc_gene_25116.t1	—	Q8VHC8.1 Lysosomal alpha-mannosidase [Cavia porcellus]	KAH7727968.1 AMAN-1 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004559\|GO:0005975\|GO:0006013\|GO:0030246	GO:0005575_0.742\|GO:0110165_0.739\|GO:0003674_0.655\|GO:0008150_0.653\|GO:0016020_0.653\|GO:0005622_0.627\|GO:0005737_0.595\|GO:0043226_0.573\|GO:0043229_0.566\|GO:0043227_0.547\|GO:0043231_0.525	IPR000602+39-360+\|IPR011013+465-995+\|IPR011330+32-362+\|IPR011682+606-821+\|IPR013780+472-568+\|IPR015341+365-439_365-454+\|IPR027291+38-326+\|IPR028995+364-459+\|IPR037094+327-407_408-462+\|IPR041147+903-991+\|IPR048534+546-566+\|IPR050843+5-995+	SM00872+365-439+	PF01074+39-360+Glycosyl_hydrolases_family_38_N-terminal_domain\|PF07748+606-821+Glycosyl_hydrolases_family_38_C-terminal_domain\|PF09261+365-454+Alpha_mannosidase_middle_domain\|PF17677+903-991+Glycosyl_hydrolases_family_38_C-terminal_beta_sandwich_domain\|PF21260+546-566+Lysosomal_alpha-mannosidase-like,_central_domain	G3DSA:1.20.1270.50:FF:000002+327-407+Alpha-mannosidase\|G3DSA:1.20.1270.50:FF:000003+408-463+Alpha-mannosidase\|G3DSA:2.70.98.30:FF:000003+603-864+Alpha-mannosidase	PTHR11607+5-995+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1002	1o7d_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.626	113528.220	6.425	-1.500	23.253	13.673	47.904	52.096	12.275	10.978	48.403

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	540.577	99.406	77.569	368.319	804.703	1152.706	400.849	124.130	10.279	1221.934	702.653

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.586	1.752	2.354	1.095	0.535	-1.517	-3.329	1.835	-7.004	—	—	—	—

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