Hg_chrom2_TN10mRNA_4441
Organism: Heterodera glycines Gene Locus: chr2:15210878-15216308 Feature type: polypeptideProtein Sequence
Length: 480
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.841 | 0.833 | 0.287 | 0.625 | 0.855 | 1.29 | 1.354 | 0.833 | 1.07 | 1.042 | 2.206 | 1.215 | 1.122 | 0.765 | 0.863 | 0.956 | 0.789 | 1.923 | 0.919 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4208
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-Not_Clustered
|
0.842
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— |
KRSKKHKHKGKS
|
— | — | — | — |
1-22
|
0.936
|
0.978
|
0.000
|
0.000
|
0.252
|
0.067
|
0.176
|
0.211
|
0.304
|
0.343
|
0.345
|
0.013
|
0.148
|
0.726
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001897
|
1.000
|
3.000
|
Hsc_gene_14897.t1;Hsc_gene_14897.t2;Hsc_gene_14897.t3
|
Hsc_gene_14897.t1;Hsc_gene_14897.t2;Hsc_gene_14897.t3;Hsc_gene_14897.t4
|
— |
P94522.3 Extracellular endo-alpha-(1-;5)-L-arabinanase 1 [Bacillus subtilis subsp. subtilis str. 168]
|
WP_237107601.1 arabinan endo-1,5-alpha-L-arabinosidase [Nonomuraea sp. MG754425]
|
MEU0382912
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.941|GO:0003674_0.885|GO:0008152_0.830|GO:0044238_0.804|GO:0043170_0.768|GO:0003824_0.757|GO:0009056_0.710|GO:0016787_0.705|GO:0009057_0.689|GO:0005975_0.684|GO:0005976_0.680|GO:0000272_0.670|GO:0016052_0.670|GO:0016798_0.660|GO:0004553_0.659|GO:0009987_0.609|GO:0005575_0.587|GO:0110165_0.583|GO:0046558_0.547
|
IPR006710+179-478+|IPR023296+159-480_177-479+|IPR050727+179-479+
|
— |
PF04616+179-478+Glycosyl_hydrolases_family_43
|
— |
PTHR43301+179-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-177
|
2.000
|
1-124;178-480
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
52905.060
|
9.662
|
17.500
|
21.667
|
12.708
|
44.792
|
55.208
|
13.333
|
8.333
|
54.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
611.566
|
3.682
|
68.225
|
151.255
|
119.610
|
18.329
|
37.927
|
29.552
|
1894.383
|
1094.097
|
1437.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.983
|
5.226
|
1.260
|
-0.369
|
-2.693
|
1.060
|
— |
0.504
|
— | — |
-3.048
|
— | — |