SCN Proteipedia

Hg_chrom2_TN10mRNA_4442

Organism: Heterodera glycines Gene Locus: chr2:15239873-15245576 Feature type: polypeptide

Protein Sequence

Length: 620

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.238	0.863	0.44	0.834	0.511	1.199	0.595	1.29	1.326	1.373	0.782	2.277	1.254	1.055	0.922	1.198	0.925	1.32	0.868	0.569	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4209	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KHKR,RKRIRKNRGR,RRRLSEQASVRKKPA,RKILCPKRVQNAQRRRLS,KKATSDTVELKTHLKEREK	—	—	—	—	—	—	0.000	—	—	0.125	0.079	0.004	0.122	0.157	0.286	0.161	0.001	0.887	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007321	1.000	1.000	Hsc_gene_14899.t1	Hsc_gene_14899.t1	—	O02213.4 Tyramine receptor Ser-2 [Caenorhabditis elegans]	KAF7637773.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0004989\|GO:0007186\|GO:0016020	GO:0008150_0.968\|GO:0009987_0.940\|GO:0065007_0.891\|GO:0050789_0.874\|GO:0005575_0.860\|GO:0050794_0.853\|GO:0110165_0.853\|GO:0003674_0.845\|GO:0023052_0.805\|GO:0050896_0.800\|GO:0007154_0.799\|GO:0051716_0.759\|GO:0060089_0.725\|GO:0038023_0.723\|GO:0007165_0.722\|GO:0004888_0.660\|GO:0007186_0.654\|GO:0016020_0.648\|GO:0071944_0.633\|GO:0005886_0.624\|GO:0010646_0.618\|GO:0023051_0.614\|GO:0004930_0.577\|GO:0005622_0.567\|GO:0032501_0.546\|GO:0048519_0.537\|GO:0048523_0.526\|GO:0008227_0.510\|GO:0006810_0.507\|GO:0051179_0.507\|GO:0051234_0.507	IPR000276+84-108_93-593_99-578_117-138_163-185_169-185_199-220_243-266_522-546_560-586+\|IPR002002+103-120_150-163_219-229_504-517+\|IPR017452+99-578+	SM01381+93-593+	PF00001+99-578+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24248+82-594+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	609-620	1.000	1-608	8w8b_R	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.807	67782.670	10.040	34.000	17.742	10.161	40.161	59.839	12.258	5.484	52.419

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	244.509	207.606	726.508	289.512	74.934	45.266	66.951	358.096	140.174	301.271	232.229

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.579	0.343	-1.219	-1.982	-0.713	0.572	2.886	-2.281	—	—	—	—	—

No JSON data available for plots.

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