Hg_chrom2_TN10mRNA_4448
Organism: Heterodera glycines Gene Locus: chr2:15345278-15355120 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 0.834 | 0.897 | 0.876 | 0.772 | 1.035 | 0.516 | 1.495 | 1.295 | 1.616 | 0.702 | 1.319 | 0.872 | 0.977 | 1.83 | 1.174 | 0.907 | 0.747 | 1.035 | 0.791 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4215
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RPRR,HKRKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.215
|
0.149
|
0.017
|
0.189
|
0.296
|
0.318
|
0.405
|
0.084
|
0.594
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007327
|
1.000
|
1.000
|
Hsc_gene_11773.t1
|
Hsc_gene_11773.t1
|
— | — |
KAI1702500.1 nucleoside 2-deoxyribosyltransferase like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR035897+27-127+|IPR039470+32-118+
|
— |
PF15891+32-118+Nucleoside_2-deoxyribosyltransferase_like
|
— |
PTHR36300+28-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;552-633
|
2.000
|
5-551;634-669
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
75733.470
|
9.850
|
37.000
|
26.158
|
10.164
|
47.534
|
52.466
|
16.592
|
9.567
|
47.534
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1155.272
|
1835.744
|
692.795
|
412.901
|
282.579
|
515.573
|
203.325
|
1951.409
|
146.768
|
2733.868
|
1625.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.634
|
-2.290
|
-0.639
|
-0.578
|
0.881
|
-1.334
|
1.842
|
-3.133
|
-4.324
|
— |
-3.002
|
— | — |
No JSON data available for plots.