Hg_chrom2_TN10mRNA_4452
Organism: Heterodera glycines Gene Locus: chr2:15402780-15407391 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.725 | 0.654 | 0.579 | 0.959 | 1.353 | 0.828 | 1.799 | 0.853 | 1.62 | 0.509 | 1.693 | 1.665 | 0.968 | 1.272 | 0.822 | 0.629 | 0.945 | 1.845 | 1.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4218
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.187
|
0.029
|
0.207
|
0.318
|
0.352
|
0.139
|
0.022
|
0.538
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007328
|
1.000
|
1.000
|
Hsc_gene_24541.t1
|
Hsc_gene_24541.t1
|
— |
Q19746.2 Innexin-3 [Caenorhabditis elegans]
|
KAF7637784.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.897|GO:0110165_0.897|GO:0008150_0.854|GO:0009987_0.742|GO:0030054_0.645|GO:0051179_0.616|GO:0006810_0.609|GO:0051234_0.609|GO:0003674_0.597|GO:0065007_0.561|GO:0016020_0.551|GO:0032501_0.551|GO:0005886_0.546|GO:0071944_0.546|GO:0050789_0.533|GO:0005911_0.529|GO:0070161_0.529|GO:0005921_0.506
|
IPR000990+1-326_1-337_2-320_16-25_45-67_140-154_188-197_212-228+
|
— |
PF00876+2-320+Innexin
|
— |
PTHR11893+1-337+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-417
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
47696.930
|
7.753
|
8.500
|
22.542
|
16.307
|
40.528
|
59.472
|
13.189
|
9.353
|
44.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
368.258
|
311.523
|
178.364
|
132.108
|
212.990
|
276.819
|
290.043
|
635.143
|
48.577
|
810.822
|
484.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.032
|
-1.375
|
-0.326
|
0.656
|
0.394
|
— |
1.093
|
-0.990
|
-4.169
|
— | — | — | — |
No JSON data available for plots.