Hg_chrom2_TN10mRNA_4456
Organism: Heterodera glycines Gene Locus: chr2:15432360-15438821 Feature type: polypeptideProtein Sequence
Length: 339
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 1.166 | 1.126 | 0.407 | 0.59 | 1.74 | 0.737 | 2.065 | 1.311 | 1.395 | 0.447 | 1.215 | 1.393 | 0.964 | 0.963 | 0.927 | 0.484 | 1.028 | 2.269 | 1.301 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4222
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_22123
|
— | — |
27-Not_Clustered
|
0.692
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
42-65
|
0.937
|
— | — |
1-22
|
0.937
|
1.000
|
0.000
|
0.000
|
0.132
|
0.170
|
0.025
|
0.321
|
0.315
|
0.481
|
0.382
|
0.010
|
0.399
|
0.615
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003454
|
1.000
|
2.000
|
Hsc_gene_22123.t1;Hsc_gene_22123.t2
|
Hsc_gene_22123.t1;Hsc_gene_22123.t2
|
— |
Q39041.2 Acid beta-fructofuranosidase 4, vacuolar [Arabidopsis thaliana]
|
WDR79815.1 putative GH32 family protein [Heterodera schachtii]
|
WP_057220963
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.810|GO:0005575_0.581|GO:0110165_0.572|GO:0003674_0.562
|
IPR013148+233-331+|IPR018053+233-246+|IPR023296+216-334_227-329+|IPR051214+228-330+
|
— |
PF00251+233-331+Glycosyl_hydrolases_family_32_N-terminal_domain
|
— |
PTHR43101+228-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
7bwb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
38771.060
|
6.496
|
0.000
|
21.534
|
16.519
|
42.773
|
57.227
|
11.799
|
9.735
|
47.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
919.138
|
86.552
|
246.547
|
474.728
|
642.569
|
233.518
|
495.863
|
559.471
|
117.371
|
2905.984
|
1710.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.282
|
2.318
|
1.054
|
0.405
|
-1.444
|
1.095
|
1.148
|
— |
-2.680
|
— | — | — | — |