SCN Proteipedia

Hg_chrom2_TN10mRNA_4460

Organism: Heterodera glycines Gene Locus: chr2:15476184-15501777 Feature type: polypeptide

Protein Sequence

Length: 2,422

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.946	1.008	0.848	1.125	0.977	0.995	0.649	1.301	1.018	1.138	0.87	1.02	1.445	1.151	1.618	1.138	0.9	0.794	1.112	0.607	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4226	—	—	0.889	—	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKRK,RHRR,HRPRRDRPKMGRR,RRRDSRRPKSARKKAT,KRDDMSIRALKRRSVR,KKLFNNRFIRAKRKEA,RKFRRQILLKFWHCRKILK	6-26	0.952	39-63	0.921	—	—	0.000	—	—	0.411	0.156	0.043	0.556	0.175	0.041	0.076	0.058	0.312	0.146

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000187	10.000	1.000	Hsc_gene_4693.t1	Hsc_gene_16544.t1;Hsc_gene_16544.t2;Hsc_gene_16544.t3;Hsc_gene_4694.t1;Hsc_gene_4694.t2;Hsc_gene_4694.t3	—	Q9Z0R0.3 Serine/threonine-protein kinase haspin [Mus musculus]	KAI1727573.1 haspin like kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468\|GO:0016020\|GO:0055085	GO:0005575_0.927\|GO:0110165_0.923\|GO:0008150_0.871\|GO:0005622_0.828\|GO:0009987_0.827\|GO:0003674_0.823\|GO:0043226_0.739\|GO:0043229_0.706\|GO:0065007_0.629\|GO:0016043_0.625\|GO:0071840_0.625\|GO:0050789_0.608\|GO:0016020_0.604\|GO:0005488_0.596\|GO:0050794_0.567\|GO:0006996_0.547\|GO:0005737_0.507	IPR000719+1085-1488+\|IPR003599+559-643_829-916+\|IPR003961+709-803_709-806_711-818_721-809+\|IPR004156+1589-1637+\|IPR007110+559-639+\|IPR011009+1084-1305+\|IPR013087+315-344_317-339+\|IPR013098+566-630_831-915+\|IPR013783+561-658_708-823_824-931+\|IPR017441+1091-1112+\|IPR024604+1317-1405+\|IPR032675+2061-2199+\|IPR036116+697-820+\|IPR036179+567-633_831-924+	SM00060+709-803+\|SM00409+559-643_829-916+\|SM01331+1317-1405+	PF00041+721-809+Fibronectin_type_III_domain\|PF03137+1589-1637+Organic_Anion_Transporter_Polypeptide_(OATP)_family\|PF07679+566-630_831-915+Immunoglobulin_I-set_domain\|PF12330+1037-1371+Haspin_like_kinase_domain	—	PTHR24419+907-1386+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;293-567;615-731;904-1039;2403-2422	4.000	6-292;568-614;732-903;1040-2402	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.878	272808.690	9.204	107.500	26.796	11.313	48.472	51.528	16.268	10.528	50.537

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2258.116	1453.932	1236.522	930.077	750.242	758.860	612.944	817.724	1375.062	6387.848	4239.511

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.463	-0.782	-0.302	-0.341	—	-0.299	—	-0.274	—	—	—	—	—

No JSON data available for plots.

Back to Browser