SCN Proteipedia

Hg_chrom3_TN10mRNA_4463

Organism: Heterodera glycines Gene Locus: chr3:35710-40034 Feature type: polypeptide

Protein Sequence

Length: 812

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.788	1.146	1.209	0.637	1.108	1.389	0.689	1.724	1.286	1.698	1.064	1.304	1.163	0.497	1.332	0.792	0.727	0.672	0.758	0.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4229	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKIFDKYCLRRNKKI,KRFAKLGDDEEVSQRFRKI	—	—	—	—	—	—	0.000	—	—	0.665	0.227	0.022	0.449	0.101	0.062	0.056	0.024	0.095	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000797	5.000	1.000	Hsc_gene_5886.t1	Hsc_gene_26372.t1;Hsc_gene_26372.t2;Hsc_gene_5886.t1	—	Q7ZU90.1 Chromodomain-helicase-DNA-binding protein 1-like [Danio rerio]	KAI1724613.1 type III restriction enzyme, res subunit family protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003678\|GO:0005524\|GO:0006281\|GO:0006338\|GO:0140658	GO:0008150_0.926\|GO:0009987_0.880\|GO:0005575_0.801\|GO:0110165_0.792\|GO:0005622_0.764\|GO:0003674_0.739\|GO:0043226_0.701\|GO:0016020_0.693\|GO:0043229_0.685\|GO:0005488_0.675\|GO:0065007_0.671\|GO:0050789_0.653\|GO:0043227_0.626\|GO:0050794_0.612\|GO:0043231_0.600\|GO:0008152_0.576\|GO:0043170_0.541\|GO:0044238_0.531\|GO:0005634_0.527\|GO:0044237_0.512\|GO:0009058_0.507	IPR000330+27-303+\|IPR001650+327-437_327-487_353-437+\|IPR014001+20-210_36-196+\|IPR027417+20-234_236-478_240-537+\|IPR031053+19-568+\|IPR038718+25-235+\|IPR043472+608-808_609-796+\|IPR049730+316-448+	SM00487+20-210+\|SM00490+353-437+	PF00176+27-303+SNF2-related_domain\|PF00271+327-437+Helicase_conserved_C-terminal_domain	—	PTHR47157+19-568+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	810-812	1.000	1-809	5jxt_M	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.593	92788.230	7.805	16.000	30.296	10.837	50.616	49.384	16.995	13.300	42.980

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	2196.151	3451.828	2215.769	2040.080	1532.058	1404.357	1376.155	2056.491	1994.548	2833.474	2473.935

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.869	-0.896	—	-0.445	—	—	0.446	-0.437	—	—	—	—	—

No JSON data available for plots.

Back to Browser