Hg_chrom3_TN10mRNA_4465
Organism: Heterodera glycines Gene Locus: chr3:50521-51878 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 1.292 | 0.898 | 0.851 | 0.926 | 2.216 | 0.294 | 0.926 | 1.372 | 0.918 | 1.59 | 2.179 | 1.543 | 0.475 | 1.008 | 1.323 | 0.304 | 0.655 | 1.425 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.445
|
0.031
|
0.510
|
0.120
|
0.057
|
0.048
|
0.044
|
0.059
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000393
|
2.000
|
6.000
|
Hsc_gene_16703.t1;Hsc_gene_16703.t2;Hsc_gene_16704.t1;Hsc_gene_16704.t2;Hsc_gene_16704.t3;Hsc_gene_16709.t1
|
— | — | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.742|GO:0110165_0.736|GO:0005622_0.713|GO:0043226_0.660|GO:0043229_0.659|GO:0005737_0.625|GO:0008150_0.576|GO:0016020_0.559|GO:0043227_0.528
|
IPR011705+66-126+
|
— |
PF07707+66-126+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+63-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
18788.600
|
9.851
|
9.500
|
27.778
|
11.728
|
53.086
|
46.914
|
17.284
|
10.494
|
41.975
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
1.003
|
0.154
|
0.300
|
0.368
|
1.052
|
0.257
|
8.207
|
1.364
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
5.028
|
— |
2.715
|
— | — | — | — | — |
No JSON data available for plots.