Hg_chrom3_TN10mRNA_4469
Organism: Heterodera glycines Gene Locus: chr3:81270-89606 Feature type: polypeptideProtein Sequence
Length: 600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 1.008 | 0.455 | 0.517 | 0.444 | 0.855 | 1.052 | 0.583 | 1.704 | 1.532 | 0.328 | 2.647 | 1.343 | 0.673 | 0.578 | 1.214 | 1.038 | 1.212 | 2.051 | 1.127 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.021
|
0.119
|
0.022
|
0.118
|
0.331
|
0.443
|
0.250
|
0.005
|
0.679
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007330
|
1.000
|
1.000
|
Hsc_gene_16547.t1
|
Hsc_gene_16547.t1
|
— |
O02228.2 High-affinity choline transporter 1 [Caenorhabditis elegans]
|
KAI3421280.1 CDP-diacylglycerol-serine O-phosphatidyltransferase, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.969|GO:0009987_0.922|GO:0006810_0.885|GO:0051179_0.885|GO:0051234_0.885|GO:0003674_0.861|GO:0055085_0.857|GO:0005215_0.820|GO:0022857_0.820|GO:0005575_0.804|GO:0110165_0.799|GO:0071944_0.779|GO:0005886_0.764|GO:0016020_0.764|GO:0071705_0.633|GO:0015695_0.507
|
IPR001734+3-455_44-441+|IPR038377+30-499+|IPR052244+1-537+
|
— |
PF00474+44-441+Sodium:solute_symporter_family
|
G3DSA:1.20.1730.10:FF:000025+33-514+High-affinity_choline_transporter_1
|
PTHR45897+1-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
565-600
|
1.000
|
1-564
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
65148.180
|
7.044
|
2.500
|
11.333
|
12.500
|
33.833
|
66.167
|
6.167
|
5.167
|
53.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
359.953
|
174.698
|
771.262
|
290.985
|
108.163
|
89.486
|
124.055
|
630.429
|
69.427
|
701.821
|
430.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.913
|
0.599
|
-1.297
|
-1.459
|
— |
0.483
|
2.720
|
-2.205
|
-3.456
|
— |
-2.520
|
— | — |
No JSON data available for plots.