Hg_chrom3_TN10mRNA_4472
Organism: Heterodera glycines Gene Locus: chr3:117040-120319 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 1.002 | 0.907 | 1.251 | 1.096 | 2.035 | 0.891 | 2.154 | 0.957 | 0.919 | 0.653 | 0.934 | 1.449 | 0.916 | 1.573 | 1.134 | 1.078 | 0.412 | 0.872 | 0.734 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4238
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.136
|
0.063
|
0.021
|
0.198
|
0.299
|
0.131
|
0.327
|
0.057
|
0.767
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16507.t1
|
— |
Q9GMU6.1 Solute carrier organic anion transporter family member 1C1 [Macaca fascicularis]
|
KAF7636993.1 Solute carrier organic anion transporter family member [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0055085
|
GO:0008150_0.904|GO:0005575_0.794|GO:0110165_0.794|GO:0009987_0.758|GO:0016020_0.732|GO:0003674_0.680|GO:0051179_0.670|GO:0006810_0.655|GO:0051234_0.655|GO:0071944_0.650|GO:0005886_0.634
|
IPR004156+222-357_245-353+|IPR036259+234-331_237-353+
|
— |
PF03137+245-353+Organic_Anion_Transporter_Polypeptide_(OATP)_family
|
— |
PTHR11388+222-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-202
|
1.000
|
203-441
|
9mgk_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
50249.020
|
7.737
|
11.500
|
27.891
|
13.152
|
54.649
|
45.351
|
16.327
|
11.565
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
729.271
|
729.050
|
543.838
|
460.114
|
488.908
|
453.411
|
470.058
|
403.796
|
740.092
|
1304.553
|
1062.641
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.652
|
-0.801
|
-0.132
|
— | — | — |
-0.272
|
0.360
|
— | — | — | — | — |
No JSON data available for plots.