Hg_chrom3_TN10mRNA_4473
Organism: Heterodera glycines Gene Locus: chr3:120802-122017 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.417 | 0.586 | 0.917 | 0.145 | 2.171 | 1.401 | 0.35 | 1.05 | 1.214 | 1.192 | 1.401 | 1.977 | 0.467 | 0.404 | 1.543 | 0.84 | 0.551 | 0.7 | 0.646 | 0.989 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4239
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
45-65
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.459
|
0.316
|
0.036
|
0.649
|
0.110
|
0.101
|
0.104
|
0.005
|
0.137
|
0.286
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007331
|
1.000
|
1.000
|
Hsc_gene_14264.t1
|
Hsc_gene_14251.t1;Hsc_gene_14264.t1;Hsc_gene_26320.t1
|
— |
Q2F637.2 14-3-3 protein zeta [Bombyx mori]
|
XP_003141285.1 14-3-3-like protein 2, variant 1 [Loa loa];AHJ11160.1 14-3-3 zeta [Loa loa];EJD74703.1 14-3-3-like protein 2, variant 1 [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.897|GO:0005575_0.871|GO:0110165_0.865|GO:0009987_0.823|GO:0005622_0.785|GO:0003674_0.721|GO:0005737_0.703|GO:0005488_0.696|GO:0043226_0.649|GO:0005515_0.618|GO:0065007_0.618|GO:0050789_0.605|GO:0016020_0.600|GO:0050794_0.560|GO:0051179_0.559|GO:0043227_0.544
|
IPR000308+1-238_4-232_37-66_84-108_115-137_148-174_175-201+|IPR023410+5-235_12-231+|IPR036815+1-238_4-232+
|
SM00101+5-235+
|
PF00244+12-231+14-3-3_protein
|
— |
PTHR18860+4-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;235-238
|
1.000
|
23-234
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
27400.160
|
6.370
|
-0.500
|
36.975
|
7.983
|
54.202
|
45.798
|
18.908
|
18.067
|
39.076
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1081.043
|
13.468
|
27.784
|
119.694
|
300.286
|
4136.698
|
87.579
|
4867.827
|
0.000
|
1147.063
|
655.464
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
3.011
|
2.219
|
1.297
|
3.798
|
-5.549
|
— |
-5.647
|
-10.956
|
7.760
|
— | — | — |
No JSON data available for plots.