Hg_chrom3_TN10mRNA_4475
Organism: Heterodera glycines Gene Locus: chr3:124444-128660 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 0.534 | 0.867 | 1.34 | 0.589 | 0.725 | 0.925 | 1.59 | 1.335 | 1.409 | 0.562 | 1.767 | 1.914 | 1.189 | 0.721 | 0.934 | 0.84 | 0.99 | 1.087 | 1.299 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4241
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.053
|
0.169
|
0.048
|
0.107
|
0.353
|
0.455
|
0.397
|
0.022
|
0.824
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007332
|
1.000
|
1.000
|
Hsc_gene_16507.t1
|
Hsc_gene_16507.t1
|
— |
Q96BD0.2 Solute carrier organic anion transporter family member 4A1 [Homo sapiens]
|
KAF7636993.1 Solute carrier organic anion transporter family member [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016020|GO:0055085
|
GO:0008150_0.912|GO:0005575_0.767|GO:0110165_0.767|GO:0009987_0.745|GO:0071944_0.733|GO:0003674_0.725|GO:0005886_0.715|GO:0016020_0.715|GO:0051179_0.699|GO:0006810_0.694|GO:0051234_0.694|GO:0055085_0.558|GO:0005215_0.537|GO:0022857_0.519|GO:0015711_0.504
|
IPR002350+326-384+|IPR004156+1-495_1-521_1-527+|IPR036259+1-300_2-522+
|
— |
PF03137+1-495+Organic_Anion_Transporter_Polypeptide_(OATP)_family
|
— |
PTHR11388+1-527+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-566
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
62787.010
|
6.751
|
3.000
|
18.728
|
15.901
|
35.512
|
64.488
|
10.424
|
8.304
|
51.060
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
931.299
|
1308.691
|
1029.480
|
1033.418
|
1080.913
|
978.344
|
1003.540
|
1061.453
|
255.415
|
1071.930
|
721.995
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.576
|
-0.478
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.