Hg_chrom3_TN10mRNA_4476
Organism: Heterodera glycines Gene Locus: chr3:128907-136339 Feature type: polypeptideProtein Sequence
Length: 1,038
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.683 | 1.277 | 0.718 | 0.598 | 1.076 | 2.396 | 0.585 | 1.252 | 1.092 | 0.937 | 0.847 | 1.247 | 1.177 | 1.056 | 1.258 | 1.294 | 0.963 | 0.861 | 0.667 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4242
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.709
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RDGKRAK,RERDRKAAPKKRERS,KKLHIYEWHIFVAVKPRGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.331
|
0.148
|
0.050
|
0.323
|
0.628
|
0.160
|
0.169
|
0.031
|
0.435
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007333
|
1.000
|
1.000
|
Hsc_gene_16508.t1
|
Hsc_gene_16508.t1
|
— | — |
KAI1732282.1 c2 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002219+951-1005_953-1005_954-1006+|IPR039934+195-1010+|IPR046349+944-1006+
|
SM00109+951-1005+
|
PF00130+954-1006+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)
|
— |
PTHR21119+195-1010+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
446-914
|
2.000
|
1-445;915-1038
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
117843.570
|
8.744
|
27.000
|
24.663
|
10.405
|
54.432
|
45.568
|
14.258
|
10.405
|
48.073
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
384.008
|
1107.262
|
427.867
|
88.994
|
87.159
|
520.593
|
176.632
|
707.493
|
3.084
|
509.222
|
292.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.603
|
-3.774
|
-2.155
|
— |
2.593
|
-1.550
|
— |
-1.856
|
-7.459
|
4.993
|
— | — | — |
No JSON data available for plots.