SCN Proteipedia

Hg_chrom3_TN10mRNA_4480

Organism: Heterodera glycines Gene Locus: chr3:162899-170366 Feature type: polypeptide

Protein Sequence

Length: 1,178

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	0.987	0.972	0.468	0.976	1.48	0.657	1.528	1.132	1.377	0.592	2.347	1.108	0.833	1.438	0.873	1.016	0.913	0.914	0.974	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4246	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRRP,RKRR,RKRARRRVRP,RRAELEEAQQRHKKP,KRRAEEEVEERDAKQRRQ	—	—	—	—	—	—	0.001	—	—	0.091	0.090	0.063	0.227	0.358	0.366	0.156	0.011	0.685	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003459	1.000	2.000	Hsc_gene_16513.t1;Hsc_gene_16513.t2	Hsc_gene_16513.t1;Hsc_gene_16513.t2	—	Q8K424.2 Transient receptor potential cation channel subfamily V member 3 [Mus musculus]	WCZ40786.1 OSM-9, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005515\|GO:0006811\|GO:0016020\|GO:0055085	GO:0008150_0.938\|GO:0009987_0.915\|GO:0003674_0.882\|GO:0005575_0.871\|GO:0110165_0.871\|GO:0051179_0.858\|GO:0006810_0.856\|GO:0051234_0.856\|GO:0016020_0.843\|GO:0055085_0.756\|GO:0071944_0.752\|GO:0005886_0.749\|GO:0006811_0.730\|GO:0034220_0.723\|GO:0005215_0.705\|GO:0015267_0.705\|GO:0022803_0.705\|GO:0022857_0.705\|GO:0005216_0.704\|GO:0015075_0.704\|GO:0006812_0.691\|GO:0098655_0.690\|GO:0005261_0.672\|GO:0008324_0.672\|GO:0098660_0.670\|GO:0030001_0.658\|GO:0098662_0.649\|GO:0015318_0.627\|GO:0022890_0.621\|GO:0046873_0.621\|GO:0006816_0.618\|GO:0070588_0.617\|GO:0065007_0.597\|GO:0005262_0.593\|GO:0015085_0.593\|GO:0005488_0.565\|GO:0005515_0.525\|GO:0050789_0.503	IPR002110+156-188_197-226_197-229_198-228_255-284_255-286_255-287_337-365+\|IPR005821+513-693+\|IPR024862+50-919+\|IPR036770+123-412_149-357+	SM00248+156-188_197-226_255-284_337-365+	PF00023+198-228_255-286+Ankyrin_repeat\|PF00520+513-693+Ion_transport_protein	—	PTHR10582+50-919+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	783-1178	1.000	1-782	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.609	134070.390	7.347	15.000	25.212	11.545	47.538	52.462	14.007	11.205	46.604

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	810.227	118.036	229.754	102.899	75.539	61.985	130.153	224.103	9.430	3184.244	1823.610

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.731	-0.336	-1.050	-0.478	—	1.079	1.760	-0.646	-8.402	—	-4.944	—	—

No JSON data available for plots.

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