Hg_chrom3_TN10mRNA_4481
Organism: Heterodera glycines Gene Locus: chr3:170808-173195 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.23 | 1.191 | 0.558 | 0.471 | 1.195 | 1.4 | 0.528 | 1.024 | 1.441 | 1.153 | 0.776 | 1.807 | 0.948 | 0.656 | 1.532 | 0.683 | 0.783 | 1.396 | 1.313 | 0.803 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4247
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRSQLFYELMKTRRSVR
|
22-43
|
0.993
|
— | — | — | — |
0.005
|
— | — |
0.143
|
0.839
|
0.112
|
0.207
|
0.592
|
0.110
|
0.158
|
0.468
|
0.185
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003460
|
2.000
|
1.000
|
Hsc_gene_16515.t1
|
Hsc_gene_16515.t1
|
— |
T2MBC4.1 Iodotyrosine deiodinase [Hydra vulgaris]
|
KAI6187555.1 Nitroreductase domain-containing protein [Aphelenchoides besseyi];KAI6200824.1 Nitroreductase domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.840|GO:0003824_0.710|GO:0005488_0.684|GO:0016491_0.662|GO:0046992_0.650|GO:0140616_0.650|GO:0008150_0.622|GO:0097159_0.606|GO:0036094_0.602|GO:0043167_0.600|GO:0043168_0.586|GO:0000166_0.582|GO:1901265_0.582|GO:1901363_0.582|GO:0097367_0.579|GO:0010181_0.574|GO:0032553_0.574|GO:0005575_0.501
|
IPR000415+92-288_115-286+|IPR029479+121-283+|IPR050627+106-287+
|
— |
PF00881+121-283+Nitroreductase_family
|
— |
PTHR23026+106-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
4ttc_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
33216.440
|
9.507
|
10.000
|
24.915
|
9.898
|
45.051
|
54.949
|
14.676
|
10.239
|
46.758
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
291.190
|
170.835
|
422.389
|
288.746
|
467.693
|
760.843
|
215.059
|
826.115
|
43.675
|
59.319
|
52.614
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.079
|
0.620
|
-0.442
|
0.663
|
0.718
|
-1.815
|
— |
-1.801
|
— | — |
3.314
|
— | — |
No JSON data available for plots.