Hg_chrom3_TN10mRNA_4483
Organism: Heterodera glycines Gene Locus: chr3:173577-189043 Feature type: polypeptideProtein Sequence
Length: 2,075
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 1.266 | 0.92 | 0.781 | 1.165 | 1.211 | 0.505 | 1.373 | 1.242 | 1.342 | 0.949 | 1.616 | 1.285 | 0.649 | 1.465 | 1.04 | 0.948 | 0.832 | 0.445 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4248
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRETLVDAIFKRSMR,RRQSLAITVSTKKLKMLRR,RRTAAAVLIKTVKKKRRRS,RKRRSSSRRTAAAVLIKTVKKKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.257
|
0.233
|
0.029
|
0.617
|
0.132
|
0.390
|
0.266
|
0.067
|
0.453
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007336
|
1.000
|
1.000
|
Hsc_gene_16516.t1
|
Hsc_gene_16516.t1;Hsc_gene_16517.t1
|
— |
Q63358.1 Unconventional myosin-IXb [Rattus norvegicus]
|
XP_024505599.1 Ras-association domain and Rho GTPase-activating protein domain and Myosin head, motor domain and Protein kinase C-like, phorbol ester/diacylglycerol binding domain and Rho GTPase activation protein domain and P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Strongyloides ratti];CEF66399.1 Ras-association domain and Rho GTPase-activating protein domain and Myosin head, motor domain and Protein kinase C-like, phorbol ester/diacylglycerol binding domain and Rho GTPase activation protein domain and P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000146|GO:0003774|GO:0005096|GO:0005515|GO:0005524|GO:0007165|GO:0016459|GO:0035556
|
GO:0005575_0.901|GO:0110165_0.897|GO:0008150_0.883|GO:0009987_0.793|GO:0005622_0.740|GO:0016020_0.705|GO:0043226_0.675|GO:0043229_0.627|GO:0003674_0.608|GO:0071944_0.601|GO:0005737_0.561|GO:0005886_0.552|GO:0005488_0.530|GO:0032502_0.527|GO:0048856_0.527|GO:0065007_0.519|GO:0016043_0.518|GO:0071840_0.518|GO:0043228_0.510|GO:0043232_0.507|GO:0050789_0.503
|
IPR000048+996-1018_1019-1041_1022-1041_1042-1064_1045-1064_1065-1087+|IPR000159+40-154_43-152+|IPR000198+1664-1856_1675-1853_1678-1825+|IPR001609+178-995_184-994_188-729_214-233_271-296_316-343_563-591_616-644_848-982+|IPR002219+1345-1396_1346-1392_1346-1396_1596-1645_1597-1645+|IPR008936+1655-1868_1661-1851+|IPR027417+182-1042_1027-1090+|IPR029071+42-131+|IPR036961+188-570_886-928+|IPR046349+1337-1396_1581-1646+|IPR046987+1234-1984+
|
SM00015+996-1018_1019-1041_1042-1064_1065-1087+|SM00109+1346-1396_1597-1645+|SM00242+178-995+|SM00314+40-154+|SM00324+1675-1853+
|
PF00063+188-729_848-982+Myosin_head_(motor_domain)|PF00130+1346-1392+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00612+1022-1041_1045-1064+IQ_calmodulin-binding_motif|PF00620+1678-1825+RhoGAP_domain|PF00788+43-152+Ras_association_(RalGDS/AF-6)_domain
|
G3DSA:3.40.850.10:FF:000008+886-928+Putative_unconventional_myosin-IXa
|
PTHR46184+1234-1984+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1139-1343;1893-2013
|
3.000
|
1-1138;1344-1892;2014-2075
|
7rb8_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
236906.020
|
8.595
|
57.500
|
28.241
|
10.602
|
51.470
|
48.530
|
16.193
|
12.048
|
45.976
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1155.042
|
2347.528
|
1430.924
|
944.695
|
453.413
|
541.570
|
409.103
|
1379.468
|
264.717
|
2039.756
|
1279.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.944
|
-1.450
|
-0.490
|
-1.090
|
0.270
|
-0.395
|
1.250
|
-1.614
|
— | — | — | — | — |
No JSON data available for plots.