Hg_chrom3_TN10mRNA_4484
Organism: Heterodera glycines Gene Locus: chr3:191576-194001 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.941 | 0.538 | 0.788 | 0.399 | 1.06 | 0.963 | 0.585 | 2.023 | 1.477 | 1.367 | 0.788 | 2.04 | 1.525 | 1.112 | 1.239 | 0.702 | 0.426 | 1.139 | 3.335 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.593
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.203
|
0.473
|
0.030
|
0.402
|
0.759
|
0.323
|
0.512
|
0.005
|
0.204
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007337
|
1.000
|
1.000
|
Hsc_gene_16518.t1
|
Hsc_gene_16518.t1
|
— |
G5EDL5.1 Epoxide hydrolase 2 [Caenorhabditis elegans]
|
KAI1717985.1 alpha/beta hydrolase fold domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0003674_0.760|GO:0008150_0.760|GO:0003824_0.702|GO:0005575_0.661|GO:0110165_0.657|GO:0008152_0.625|GO:0016020_0.590|GO:0009987_0.581|GO:0016787_0.571
|
IPR000073+84-329_109-124_154-167_168-181+|IPR000639+90-108_154-167_321-343+|IPR029058+54-345_56-345+
|
— |
PF00561+84-329+alpha/beta_hydrolase_fold
|
— |
PTHR43329+57-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
40312.030
|
8.181
|
9.000
|
26.012
|
16.763
|
39.595
|
60.405
|
15.318
|
10.694
|
41.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey60
|
588.806
|
474.788
|
861.912
|
276.738
|
397.256
|
633.901
|
1090.133
|
346.912
|
363.907
|
772.481
|
597.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
-0.916
|
-1.530
|
0.489
|
0.691
|
0.791
|
-0.977
|
1.794
|
— | — | — | — | — |
No JSON data available for plots.