Hg_chrom3_TN10mRNA_4485
Organism: Heterodera glycines Gene Locus: chr3:194391-204027 Feature type: polypeptideProtein Sequence
Length: 1,528
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.537 | 1.178 | 0.203 | 1.723 | 1.158 | 0.709 | 1.211 | 1.294 | 1.256 | 0.932 | 1.309 | 1.2 | 1.12 | 0.721 | 0.851 | 0.815 | 1.051 | 0.554 | 0.5 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4250
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
PRKRP,KKAEEENKKKEERQKDKGK
|
— | — | — | — |
1-24
|
0.841
|
0.994
|
0.000
|
0.000
|
0.267
|
0.252
|
0.029
|
0.363
|
0.129
|
0.117
|
0.203
|
0.057
|
0.474
|
0.573
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007338
|
1.000
|
1.000
|
Hsc_gene_16519.t1
|
— | — |
O60330.1 Protocadherin gamma-A12 [Homo sapiens]
|
KAI3421312.1 CA [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0008150_0.855|GO:0005575_0.717|GO:0110165_0.716|GO:0009987_0.605|GO:0032501_0.600|GO:0016020_0.595|GO:0032502_0.586|GO:0048856_0.586|GO:0007275_0.549|GO:0005622_0.510|GO:0048731_0.507
|
IPR002126+682-711_683-800_704-798_779-798_1154-1259_1175-1257_1203-1229_1277-1380_1299-1378_1362-1379_1383-1495_1389-1481_1404-1493+|IPR015919+687-800_1158-1275_1281-1380_1369-1486+|IPR020894+788-798+|IPR050174+686-991+
|
SM00112+704-798_1175-1257_1299-1378_1404-1493+
|
PF00028+1389-1481+Cadherin_domain
|
— |
PTHR24028+686-991+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96;275-610
|
2.000
|
97-274;611-1528
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
171331.490
|
4.436
|
-90.500
|
28.927
|
9.162
|
50.982
|
49.018
|
12.107
|
16.819
|
48.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
189.182
|
36.469
|
42.315
|
21.748
|
99.811
|
86.331
|
26.055
|
43.594
|
15.329
|
682.553
|
396.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.883
|
-0.850
|
2.166
|
— |
-1.719
|
-1.101
|
— |
-5.604
|
— | — | — | — |