SCN Proteipedia

Hg_chrom3_TN10mRNA_4491

Organism: Heterodera glycines Gene Locus: chr3:234667-238541 Feature type: polypeptide

Protein Sequence

Length: 446

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.73	1.147	0.571	1.392	0.486	0.862	0.374	1.121	1.694	2.03	0.476	1.055	2.055	0.561	1.144	1.121	1.25	1.053	1.035	0.791	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4256	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.952

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRKL,RKRK,RRKR	—	—	—	—	—	—	0.000	—	—	0.067	0.049	0.015	0.084	0.425	0.196	0.188	0.065	0.859	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007343	1.000	1.000	Hsc_gene_16527.t1	Hsc_gene_16527.t1;Hsc_gene_16532.t1	—	Q20929.1 G-protein coupled receptor dmsr-1 [Caenorhabditis elegans]	KAI3421318.1 Serpentine type 7TM GPCR chemoreceptor Srw [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008528\|GO:0016020	GO:0008150_0.963\|GO:0009987_0.927\|GO:0005575_0.922\|GO:0110165_0.922\|GO:0071944_0.919\|GO:0005886_0.913\|GO:0016020_0.913\|GO:0065007_0.859\|GO:0003674_0.849\|GO:0050896_0.837\|GO:0050789_0.833\|GO:0051716_0.823\|GO:0050794_0.816\|GO:0004888_0.812\|GO:0038023_0.812\|GO:0060089_0.812\|GO:0007154_0.807\|GO:0023052_0.803\|GO:0032501_0.799\|GO:0007165_0.780\|GO:0007186_0.759\|GO:0005488_0.735\|GO:0004930_0.729\|GO:0051239_0.714\|GO:0007610_0.690\|GO:0042277_0.677\|GO:0050795_0.674\|GO:0001653_0.668\|GO:0008528_0.667\|GO:0006950_0.582\|GO:0048583_0.575\|GO:0009628_0.559\|GO:0033554_0.549\|GO:0080134_0.543\|GO:0007218_0.539\|GO:0048511_0.534\|GO:0007623_0.531\|GO:0007622_0.526\|GO:0009266_0.526\|GO:0009408_0.526\|GO:0022410_0.526\|GO:0030431_0.526\|GO:0034605_0.526\|GO:0042745_0.526\|GO:0042749_0.526\|GO:0042752_0.526\|GO:0045187_0.526\|GO:0048512_0.526\|GO:0050802_0.526\|GO:0080135_0.526\|GO:1900034_0.526\|GO:0042923_0.517\|GO:0008188_0.516	IPR017452+52-332+\|IPR019427+43-349+\|IPR053219+7-379+	—	PF10324+43-349+Serpentine_type_7TM_GPCR_chemoreceptor_Srw	—	PTHR46273+7-379+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-446	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.750	50687.770	8.657	17.000	17.040	13.677	40.807	59.193	10.987	6.054	46.861

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	186.966	12.167	34.002	26.505	13.640	4.385	24.653	58.599	0.000	752.743	430.139

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.254	0.987	—	-0.991	-1.623	2.502	3.631	-1.106	-10.346	5.585	-5.444	—	—

No JSON data available for plots.

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