SCN Proteipedia

Hg_chrom3_TN10mRNA_4494

Organism: Heterodera glycines Gene Locus: chr3:245527-249631 Feature type: polypeptide

Protein Sequence

Length: 441

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.87	1.055	0.577	1.329	0.529	0.698	0.378	1.02	1.814	2.114	0.412	0.667	1.953	0.959	1.064	1.101	1.152	0.962	1.047	0.734	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4259	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_4494	10-Not_Clustered	0.758

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKRK	—	—	—	—	—	—	0.000	—	—	0.072	0.049	0.014	0.100	0.417	0.204	0.194	0.052	0.864	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007346	1.000	1.000	Hsc_gene_16532.t1	Hsc_gene_16527.t1;Hsc_gene_16532.t1	—	Q20929.1 G-protein coupled receptor dmsr-1 [Caenorhabditis elegans]	KAI3421318.1 Serpentine type 7TM GPCR chemoreceptor Srw [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008528\|GO:0016020	GO:0008150_0.965\|GO:0005575_0.940\|GO:0110165_0.940\|GO:0005886_0.937\|GO:0016020_0.937\|GO:0071944_0.937\|GO:0009987_0.933\|GO:0065007_0.878\|GO:0003674_0.846\|GO:0050896_0.845\|GO:0050789_0.844\|GO:0004888_0.843\|GO:0038023_0.843\|GO:0060089_0.843\|GO:0051716_0.833\|GO:0050794_0.830\|GO:0023052_0.826\|GO:0007154_0.824\|GO:0032501_0.807\|GO:0007165_0.800\|GO:0007186_0.774\|GO:0004930_0.753\|GO:0005488_0.738\|GO:0048583_0.723\|GO:0006950_0.719\|GO:0051239_0.717\|GO:0009628_0.698\|GO:0007610_0.694\|GO:0033554_0.691\|GO:0080134_0.688\|GO:0007218_0.684\|GO:0042277_0.680\|GO:0048511_0.679\|GO:0007623_0.676\|GO:0050795_0.676\|GO:0001653_0.674\|GO:0008528_0.671\|GO:0007622_0.670\|GO:0009266_0.670\|GO:0009408_0.670\|GO:0022410_0.670\|GO:0030431_0.670\|GO:0034605_0.670\|GO:0042745_0.670\|GO:0042749_0.670\|GO:0042752_0.670\|GO:0045187_0.670\|GO:0048512_0.670\|GO:0050802_0.670\|GO:0080135_0.670\|GO:1900034_0.670\|GO:0042923_0.658\|GO:0008188_0.656\|GO:0036477_0.604\|GO:0044297_0.596\|GO:0043025_0.588\|GO:0032809_0.540\|GO:0044298_0.540	IPR017452+52-332+\|IPR019427+43-349+\|IPR053219+4-357+	—	PF10324+43-349+Serpentine_type_7TM_GPCR_chemoreceptor_Srw	—	PTHR46273+4-357+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-441	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	49538.460	8.250	11.500	16.327	12.925	38.322	61.678	9.977	6.349	48.299

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	1556.494	189.031	94.037	57.335	18.431	15.529	56.595	106.639	96.538	6535.659	3776.036

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.238	-1.858	-0.604	-1.673	—	1.876	2.678	-0.772	-3.115	—	-5.205	—	—

No JSON data available for plots.

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