Hg_chrom3_TN10mRNA_4495
Organism: Heterodera glycines Gene Locus: chr3:254959-256262 Feature type: polypeptideProtein Sequence
Length: 80
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.453 | 0.455 | 2.586 | 0.208 | 0.962 | 0.893 | 1.25 | 0.833 | 1.351 | 1.705 | 0.735 | 1.736 | 1.202 | 0.765 | 0.893 | 0.41 | 0.947 | 2.885 | 0.368 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4260
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16533;Hsc_gene_16533a
|
Hg_chrom3_TN10mRNA_4495
|
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.997
|
1.000
|
0.000
|
0.000
|
0.439
|
0.256
|
0.273
|
0.239
|
0.234
|
0.143
|
0.146
|
0.056
|
0.140
|
0.871
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007347
|
1.000
|
1.000
|
Hsc_gene_16533.t3
|
Hsc_gene_16533.t3
|
— |
P0CY85.1 Kunitz-type conkunitzin-B1 [Conus bullatus]
|
XP_013109344.2 kunitz-like toxin PcKuz3 [Stomoxys calcitrans]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.750|GO:0003674_0.656|GO:0005575_0.635|GO:0110165_0.635|GO:0005488_0.509|GO:0005515_0.509
|
IPR002223+28-79_29-79_30-78+|IPR036880+20-79_28-79+|IPR051388+22-79+
|
SM00131+28-79+
|
PF00014+29-79+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46751+22-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
2jot_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
8997.660
|
10.136
|
10.000
|
21.250
|
13.750
|
40.000
|
60.000
|
17.500
|
3.750
|
51.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
purple
|
2894.097
|
643.793
|
174.313
|
611.049
|
659.130
|
7174.351
|
19305.122
|
2762.873
|
8.448
|
906.353
|
521.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.114
|
-0.212
|
1.918
|
— |
3.456
|
1.439
|
-1.497
|
2.952
|
-6.976
|
6.451
|
— | — | — |