Hg_chrom3_TN10mRNA_4496
Organism: Heterodera glycines Gene Locus: chr3:258261-259309 Feature type: polypeptideProtein Sequence
Length: 83
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 1.681 | 0.438 | 2.493 | 0.0 | 1.236 | 0.861 | 0.602 | 0.0 | 1.303 | 1.825 | 0.709 | 2.008 | 1.39 | 0.738 | 0.861 | 0.593 | 1.095 | 2.78 | 0.354 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4261
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16533;Hsc_gene_16533a
|
Hg_chrom3_TN10mRNA_4496
|
1-Not_Clustered
|
0.466
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.989
|
1.000
|
0.000
|
0.000
|
0.430
|
0.288
|
0.237
|
0.219
|
0.213
|
0.164
|
0.152
|
0.051
|
0.150
|
0.907
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007348
|
1.000
|
1.000
|
Hsc_gene_16533.t1
|
Hsc_gene_16533.t1;Hsc_gene_16533.t2
|
— | — |
XP_013109344.2 kunitz-like toxin PcKuz3 [Stomoxys calcitrans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.824|GO:0005575_0.648|GO:0110165_0.643|GO:0003674_0.586|GO:0065007_0.568|GO:0009987_0.506
|
IPR002223+31-82_32-82_33-81+|IPR036880+22-82_31-82+|IPR053014+21-82+
|
SM00131+31-82+
|
PF00014+32-82+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+21-82+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-83
|
2jot_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
9277.940
|
10.496
|
11.500
|
19.277
|
13.253
|
40.964
|
59.036
|
16.867
|
2.410
|
55.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
1227.354
|
868.997
|
78.496
|
155.803
|
952.720
|
1949.529
|
2028.073
|
2774.260
|
5.529
|
2062.574
|
1180.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.696
|
-2.617
|
1.096
|
2.581
|
1.047
|
— | — | — |
-8.757
|
5.066
|
— | — | — |