Hg_chrom3_TN10mRNA_4497
Organism: Heterodera glycines Gene Locus: chr3:261038-264091 Feature type: polypeptideProtein Sequence
Length: 411
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.301 | 0.619 | 0.839 | 1.906 | 1.248 | 0.927 | 0.73 | 0.865 | 1.249 | 1.548 | 1.574 | 1.419 | 0.795 | 1.142 | 0.626 | 0.519 | 0.774 | 0.936 | 0.358 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4262
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_4497
|
12-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
FKVK,KRKEDDGNERKKVIR,KKAEEKQEEKEKREEK
|
— | — | — | — |
1-26
|
0.931
|
1.000
|
0.000
|
0.000
|
0.464
|
0.225
|
0.027
|
0.538
|
0.137
|
0.118
|
0.172
|
0.003
|
0.173
|
0.340
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000394
|
2.000
|
6.000
|
Hsc_gene_16534.t1;Hsc_gene_16592.t1;Hsc_gene_16594.t1;Hsc_gene_16594.t2;Hsc_gene_22453.t1;Hsc_gene_22453.t2
|
— | — | — |
KAI3407812.1 hypothetical protein GPALN_014150 [Globodera pallida]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR027484+15-299+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
46607.410
|
8.164
|
7.000
|
32.117
|
9.002
|
50.122
|
49.878
|
17.275
|
14.842
|
43.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
285.129
|
90.288
|
86.257
|
156.572
|
80.298
|
75.563
|
142.757
|
100.268
|
350.061
|
710.391
|
555.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.294
|
0.657
|
0.969
|
-0.997
|
— |
0.930
|
— |
0.653
|
— | — |
-2.959
|
— | — |