Hg_chrom3_TN10mRNA_4501
Organism: Heterodera glycines Gene Locus: chr3:277246-278240 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 1.42 | 0.416 | 1.579 | 0.382 | 0.979 | 0.909 | 1.908 | 0.848 | 1.135 | 1.735 | 1.347 | 1.908 | 1.028 | 0.623 | 1.091 | 0.626 | 0.925 | 1.762 | 0.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4266
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_23496
|
— |
16-Females_and_Males
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
20-54
|
0.995
|
— | — |
0.000
|
— | — |
0.102
|
0.029
|
0.025
|
0.062
|
0.109
|
0.067
|
0.046
|
0.002
|
0.083
|
0.912
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16535.t1;Hsc_gene_23496.t1
|
— | — |
XP_064484467.1 actinia tenebrosa protease inhibitors-like [Ornithodoros turicata]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.782|GO:0005575_0.631|GO:0110165_0.628|GO:0003674_0.627
|
IPR002223+79-130_80-130_81-129+|IPR036880+76-130_79-130+|IPR053014+66-130+
|
SM00131+79-130+
|
PF00014+80-130+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+66-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-131
|
6yhy_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
14537.040
|
10.535
|
15.500
|
22.901
|
13.740
|
44.275
|
55.725
|
18.321
|
4.580
|
51.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
purple
|
513.915
|
364.954
|
63.934
|
149.671
|
604.730
|
561.788
|
2101.648
|
1413.279
|
0.000
|
275.878
|
157.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.744
|
-1.423
|
1.336
|
1.983
|
— |
1.909
|
1.220
|
0.712
|
-8.931
|
8.083
|
— | — | — |
No JSON data available for plots.