Hg_chrom3_TN10mRNA_4504
Organism: Heterodera glycines Gene Locus: chr3:286166-287212 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.287 | 1.148 | 0.898 | 0.213 | 1.749 | 1.425 | 0.955 | 1.235 | 1.235 | 1.001 | 1.029 | 1.816 | 1.715 | 0.95 | 1.512 | 0.705 | 0.708 | 1.216 | 0.475 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.327
|
0.514
|
0.050
|
0.520
|
0.157
|
0.222
|
0.075
|
0.016
|
0.150
|
0.358
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000395
|
6.000
|
2.000
|
Hsc_gene_8771.t1;Hsc_gene_8801.t1
|
Hsc_gene_8771.t1
|
— | — |
KAF7638980.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.857|GO:0005575_0.782|GO:0110165_0.776|GO:0005622_0.748|GO:0005737_0.661|GO:0050896_0.622|GO:0009987_0.594|GO:0003674_0.574|GO:0006950_0.521|GO:0043226_0.507
|
IPR001436+33-148+|IPR002068+42-148_57-145+|IPR008978+30-162_58-146+
|
— |
PF00011+57-145+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+33-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
135-162
|
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
18648.210
|
6.495
|
0.000
|
32.099
|
10.494
|
51.852
|
48.148
|
16.667
|
15.432
|
43.210
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1520.953
|
2251.149
|
590.641
|
561.784
|
998.812
|
1201.372
|
2133.092
|
1529.708
|
1586.366
|
1989.437
|
1816.692
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.161
|
-2.140
|
— |
0.799
|
0.281
|
0.840
|
— |
0.622
|
— | — | — | — | — |
No JSON data available for plots.