SCN Proteipedia

Hg_chrom3_TN10mRNA_4509

Organism: Heterodera glycines Gene Locus: chr3:305202-314329 Feature type: polypeptide

Protein Sequence

Length: 805

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.083	0.722	0.903	0.514	1.242	1.147	0.784	1.242	0.718	0.957	0.546	1.608	1.139	1.194	1.648	1.136	0.937	1.148	1.051	0.731	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4274	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.840

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.458	0.165	0.046	0.659	0.087	0.072	0.073	0.020	0.469	0.088

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003464	2.000	1.000	Hsc_gene_16541.t1	Hsc_gene_16541.t1	—	Q23551.3 Twitchin [Caenorhabditis elegans]	KAI3421286.1 IG-like protein, partial [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.939\|GO:0009987_0.873\|GO:0005575_0.847\|GO:0110165_0.840\|GO:0065007_0.816\|GO:0050789_0.770\|GO:0003674_0.765\|GO:0005622_0.726\|GO:0050794_0.700\|GO:0050896_0.601\|GO:0032501_0.594\|GO:0003824_0.567\|GO:0005737_0.566\|GO:0016740_0.563\|GO:0140096_0.560\|GO:0005488_0.559\|GO:0032502_0.552\|GO:0048856_0.552\|GO:0043226_0.548\|GO:0048518_0.542\|GO:0016772_0.505\|GO:0016020_0.504	IPR000719+25-282+\|IPR003598+368-436_545-611+\|IPR003599+362-447_539-622+\|IPR007110+356-445_524-620+\|IPR008271+143-155+\|IPR011009+10-325+\|IPR013098+356-446_534-621+\|IPR013783+353-452_526-629+\|IPR017441+31-54+\|IPR036179+356-450_533-624+	SM00220+25-282+\|SM00408+368-436_545-611+\|SM00409+362-447_539-622+	PF00069+25-282+Protein_kinase_domain\|PF07679+356-446_534-621+Immunoglobulin_I-set_domain	G3DSA:1.10.510.10:FF:000321+105-363+Bent,_isoform_C\|G3DSA:2.60.40.10:FF:000557+527-626+Myosin_binding_protein_Ha	PTHR14340+514-643+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	443-511;602-686	3.000	1-442;512-601;687-805	3uto_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.702	89612.100	6.838	4.000	26.584	10.435	47.826	52.174	14.161	12.422	52.919

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1398.172	857.501	1717.459	907.791	559.766	508.274	402.968	1932.260	374.938	3253.540	2019.854

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.773	—	-0.811	-0.729	—	-0.325	1.825	-2.121	-3.215	—	—	—	—

No JSON data available for plots.

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