SCN Proteipedia

Hg_chrom3_TN10mRNA_4510

Organism: Heterodera glycines Gene Locus: chr3:317282-359326 Feature type: polypeptide

Protein Sequence

Length: 5,692

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.85	0.87	1.223	0.43	1.271	0.901	1.006	0.773	0.898	0.793	1.118	0.61	0.693	1.666	1.194	0.796	1.02	1.272	1.419	0.729	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4275	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.648

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRR,RKSK,RRRR,AGRR,KKRVEHEFLQVQLKKTAK,KKRDTSISISEQEKQRQR,KRNSMQRLQGVQVGKKRVE,RRLAPKIDRSAMPEIRIKK	—	—	—	—	—	—	0.000	—	—	0.395	0.137	0.045	0.683	0.076	0.030	0.062	0.031	0.463	0.184

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000171	1.000	11.000	Hsc_gene_16542.t1;Hsc_gene_19420.t1;Hsc_gene_19420.t2;Hsc_gene_19420.t3;Hsc_gene_19420.t4;Hsc_gene_26097.t1;Hsc_gene_26098.t1;Hsc_gene_4694.t1;Hsc_gene_4694.t2;Hsc_gene_4694.t3;Hsc_gene_4694.t4	Hsc_gene_16514.t1;Hsc_gene_16542.t1;Hsc_gene_16543.t1;Hsc_gene_16544.t1;Hsc_gene_16544.t2;Hsc_gene_16544.t3	—	Q23551.3 Twitchin [Caenorhabditis elegans]	KAI6211826.1 Twitchin [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.908\|GO:0110165_0.895\|GO:0008150_0.891\|GO:0003674_0.842\|GO:0005622_0.816\|GO:0009987_0.801\|GO:0005488_0.750\|GO:0043226_0.745\|GO:0065007_0.738\|GO:0050789_0.725\|GO:0043229_0.722\|GO:0005737_0.718\|GO:0032501_0.695\|GO:0005515_0.689\|GO:0043228_0.681\|GO:0043232_0.681\|GO:0071840_0.677\|GO:0016043_0.670\|GO:0032502_0.662\|GO:0048856_0.662\|GO:0030154_0.594\|GO:0048869_0.594\|GO:0044085_0.591\|GO:0050794_0.588\|GO:0048468_0.585\|GO:0003824_0.575\|GO:0009653_0.574\|GO:0022607_0.572\|GO:0006996_0.571\|GO:0099080_0.568\|GO:0007010_0.563\|GO:0003008_0.554\|GO:0048646_0.548\|GO:0099081_0.542\|GO:0099512_0.541\|GO:0003012_0.540\|GO:0006936_0.539\|GO:0030029_0.536\|GO:0050896_0.534\|GO:0061061_0.532\|GO:0070925_0.530\|GO:0097435_0.525\|GO:0030036_0.524\|GO:0140694_0.524\|GO:0042692_0.516\|GO:0031032_0.515\|GO:0051146_0.515\|GO:0010927_0.512\|GO:0030239_0.512\|GO:0032989_0.512\|GO:0055001_0.512\|GO:0055002_0.512\|GO:0045214_0.502	IPR003598+300-369_448-515_633-700_1120-1187_1416-1485_1711-1778_2006-2072_2297-2367_2599-2666_2893-2961_3188-3255_3778-3840_4474-4543_4875-4943_5275-5342_5373-5440+\|IPR003599+294-380_440-524_535-617_627-707_716-797_1114-1198_1410-1496_1705-1789_2000-2083_2291-2378_2593-2677_2887-2972_3182-3266_3474-3559_3772-3851_4170-4255_4468-4554_4869-4954_4963-5048_5269-5353_5367-5451+\|IPR003961+904-986_907-999_914-990_915-994_1003-1089_1003-1091_1005-1090_1005-1105_1201-1286_1201-1291_1203-1289_1204-1300_1304-1385_1304-1392_1306-1392_1306-1399_1499-1579_1499-1586_1501-1582_1502-1593_1597-1680_1597-1687_1599-1693_1610-1686_1792-1874_1792-1879_1793-1877_1795-1888_1891-1989_1892-1975_1892-1981_1898-1982_2086-2168_2086-2173_2088-2171_2089-2182_2186-2268_2186-2274_2188-2282_2196-2275_2381-2466_2381-2470_2383-2470_2383-2480_2484-2568_2484-2578_2486-2581_2497-2575_2680-2762_2680-2766_2683-2765_2683-2776_2780-2862_2781-2869_2782-2876_2788-2869_2975-3057_2975-3059_2977-3059_2978-3071_3075-3157_3075-3167_3077-3165_3077-3170_3269-3351_3269-3355_3271-3355_3271-3365_3369-3448_3369-3450_3371-3457_3371-3463_3562-3645_3562-3654_3564-3647_3564-3659_3663-3746_3663-3753_3665-3753_3665-3760_3854-3937_3854-3946_3856-3950_3865-3939_3954-4039_3954-4042_3956-4043_3956-4053_4057-4145_4057-4157_4059-4151_4059-4160_4258-4340_4258-4346_4260-4354_4266-4342_4358-4442_4358-4446_4360-4456_4371-4448_4557-4642_4557-4646_4559-4644_4559-4656_4660-4743_4660-4749_4661-4749_4662-4757_4760-4858_4761-4844_4761-4853_4763-4851_5051-5143_5051-5149_5054-5145_5054-5157_5160-5257_5161-5244_5161-5247_5164-5246_5454-5534_5454-5541_5456-5541_5456-5551+\|IPR007110+287-380_440-520_524-601_619-705_1107-1196_1398-1494_1698-1787_1993-2081_2586-2675_2880-2970_3175-3264_3468-3559_3764-3849_4460-4554_4863-4954_5263-5353+\|IPR013098+289-379_447-511_622-697_711-788_1114-1197_1410-1495_1702-1788_1999-2082_2291-2377_2587-2676_2887-2971_3182-3265_3468-3558_3772-3850_4169-4254_4469-4553_4863-4953_5263-5351_5369-5450+\|IPR013783+279-384_442-522_523-618_619-709_710-804_898-998_1000-1101_1102-1199_1201-1301_1302-1398_1404-1497_1498-1591_1592-1695_1696-1790_1791-1884_1885-1990_1992-2084_2085-2181_2185-2291_2292-2379_2380-2479_2480-2584_2585-2678_2679-2775_2776-2876_2879-2973_2974-3067_3068-3172_3174-3267_3268-3362_3363-3463_3466-3558_3559-3658_3659-3762_3763-3852_3853-3947_3948-4053_4054-4159_4164-4254_4255-4352_4353-4456_4462-4555_4556-4654_4659-4756_4757-4856_4857-4956_4957-5049_5051-5156_5157-5255_5257-5363_5364-5449_5450-5545+\|IPR036116+903-1093_1200-1395_1497-1687_1791-1986_2085-2278_2379-2581_2678-2871_2973-3169_3267-3460_3560-3755_3852-4046_4045-4164_4256-4451_4555-4750_4747-4858_5050-5246_5440-5555+\|IPR036179+287-381_449-526_527-609_613-706_712-795_803-910_1114-1207_1410-1505_1705-1798_1998-2092_2286-2387_2593-2686_2887-2981_3182-3275_3468-3568_3773-3860_4167-4264_4468-4563_4863-4958_4957-5057_5263-5362_5366-5458+	SM00060+904-986_1003-1089_1201-1286_1304-1385_1499-1579_1597-1680_1792-1874_1892-1975_2086-2168_2186-2268_2381-2466_2484-2568_2680-2762_2780-2862_2975-3057_3075-3157_3269-3351_3369-3450_3562-3645_3663-3746_3854-3937_3954-4039_4057-4145_4258-4340_4358-4442_4557-4642_4660-4743_4761-4844_5051-5143_5161-5244_5454-5534+\|SM00408+300-369_448-515_633-700_1120-1187_1416-1485_1711-1778_2006-2072_2297-2367_2599-2666_2893-2961_3188-3255_3778-3840_4474-4543_4875-4943_5275-5342_5373-5440+\|SM00409+294-380_440-524_535-617_627-707_716-797_1114-1198_1410-1496_1705-1789_2000-2083_2291-2378_2593-2677_2887-2972_3182-3266_3474-3559_3772-3851_4170-4255_4468-4554_4869-4954_4963-5048_5269-5353_5367-5451+	PF00041+914-990_1005-1090_1203-1289_1306-1392_1501-1582_1610-1686_1793-1877_1898-1982_2088-2171_2196-2275_2383-2470_2497-2575_2683-2765_2788-2869_2977-3059_3077-3165_3271-3355_3371-3457_3564-3647_3665-3753_3865-3939_3956-4043_4059-4151_4266-4342_4371-4448_4559-4644_4661-4749_4763-4851_5054-5145_5164-5246_5456-5541+Fibronectin_type_III_domain\|PF07679+289-379_447-511_622-697_711-788_1114-1197_1410-1495_1702-1788_1999-2082_2291-2377_2587-2676_2887-2971_3182-3265_3468-3558_3772-3850_4169-4254_4469-4553_4863-4953_5263-5351_5369-5450+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000003+3561-3657_4556-4654+Titin_isoform_E\|G3DSA:2.60.40.10:FF:000031+1401-1497_1992-2084_2284-2379_3760-3852_4162-4256_4459-4555+Myosin-binding_protein_C,_slow_type\|G3DSA:2.60.40.10:FF:000032+284-383+palladin_isoform_X1\|G3DSA:2.60.40.10:FF:000051+1105-1199_2878-2973_3173-3267+Uncharacterized_protein,_isoform_J\|G3DSA:2.60.40.10:FF:000056+1302-1400_1498-1594_1595-1695_1791-1889_1890-1990_2184-2283_2482-2583_2679-2777_2778-2877_3073-3172_5159-5257+twitchin_isoform_X4\|G3DSA:2.60.40.10:FF:000107+4862-4955+Myosin,_light_chain_kinase_a\|G3DSA:2.60.40.10:FF:000127+3368-3465_3662-3759+titin_isoform_X1\|G3DSA:2.60.40.10:FF:000147+5259-5356+Myosin_light_chain_kinase\|G3DSA:2.60.40.10:FF:000160+1002-1103_1200-1300_2085-2182_2974-3071_3953-4052_4056-4159_4257-4354_4357-4456_4760-4858+Titin_a\|G3DSA:2.60.40.10:FF:000504+4659-4758+Bent,_isoform_J\|G3DSA:2.60.40.10:FF:000567+1696-1790_2584-2678+Uncharacterized_protein,_isoform_G\|G3DSA:2.60.40.10:FF:002083+2380-2479_3268-3364+Protein_CBR-UNC-22	PTHR14340+3776-4858+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-291;393-437;989-1408;1485-3095;3135-3313;3631-3774;3835-3885;3934-4165;5560-5692	8.000	292-392;438-988;1409-1484;3096-3134;3314-3630;3775-3834;3886-3933;4166-5559	8bvo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.759	625989.360	6.192	-20.000	29.129	8.363	48.173	51.827	14.775	14.353	56.325

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	6501.906	7044.720	17190.058	7007.947	2362.282	3420.371	849.217	10314.381	2485.937	8510.520	5928.556

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.058	-0.145	-1.186	-1.600	0.548	-2.001	1.490	-3.462	—	—	—	—	—

No JSON data available for plots.

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