Hg_chrom3_TN10mRNA_4514
Organism: Heterodera glycines Gene Locus: chr3:393047-397233 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.071 | 0.896 | 0.74 | 0.665 | 0.571 | 0.494 | 0.739 | 1.178 | 1.523 | 1.794 | 0.422 | 2.015 | 1.844 | 0.947 | 1.224 | 0.704 | 1.053 | 0.616 | 2.635 | 1.26 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
83-114
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.070
|
0.220
|
0.054
|
0.125
|
0.867
|
0.087
|
0.150
|
0.012
|
0.315
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007357
|
1.000
|
1.000
|
Hsc_gene_16553.t1
|
Hsc_gene_16553.t1
|
— |
A8WXS4.1 Lysophospholipid acyltransferase 7 [Caenorhabditis briggsae]
|
KAI1725718.1 MBOAT, membrane-bound o-acyltransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0009987_0.891|GO:0003674_0.819|GO:0008152_0.788|GO:0005575_0.761|GO:0110165_0.761|GO:0044238_0.758|GO:0044237_0.754|GO:0003824_0.732|GO:0016020_0.729|GO:0016740_0.641|GO:0006629_0.636|GO:0044255_0.620|GO:0016746_0.606|GO:0016747_0.600|GO:0071944_0.563|GO:0005886_0.553|GO:0006793_0.518|GO:0006796_0.518|GO:0019637_0.514
|
IPR004299+170-407+|IPR049941+28-460+
|
— |
PF03062+170-407+MBOAT,_membrane-bound_O-acyltransferase_family
|
— |
PTHR13906+28-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-467
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
53359.430
|
8.521
|
11.500
|
18.630
|
16.702
|
35.760
|
64.240
|
11.135
|
7.495
|
45.610
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkorange
|
213.711
|
189.107
|
200.422
|
255.175
|
325.501
|
271.903
|
559.178
|
215.879
|
59.347
|
134.037
|
102.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.295
|
0.458
|
0.319
|
-0.245
|
1.051
|
-0.440
|
1.517
|
— | — | — | — | — |
No JSON data available for plots.