Hg_chrom3_TN10mRNA_4515
Organism: Heterodera glycines Gene Locus: chr3:397462-402026 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.347 | 1.077 | 1.193 | 2.396 | 0.772 | 0.891 | 0.506 | 0.772 | 0.772 | 0.73 | 0.761 | 1.817 | 1.18 | 1.782 | 1.261 | 1.048 | 0.886 | 0.41 | 0.594 | 1.022 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4280
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
10-33
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.188
|
0.099
|
0.005
|
0.279
|
0.375
|
0.560
|
0.609
|
0.001
|
0.626
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007358
|
1.000
|
1.000
|
Hsc_gene_16554.t1
|
Hsc_gene_16554.t1
|
— |
P60904.1 DnaJ homolog subfamily C member 5 [Mus musculus]
|
KAI1726544.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0110165_0.826|GO:0008150_0.806|GO:0009987_0.671|GO:0005622_0.642|GO:0016020_0.639|GO:0065007_0.629|GO:0003674_0.623|GO:0050789_0.594|GO:0005488_0.592|GO:0005737_0.562|GO:0043226_0.522|GO:0005515_0.520|GO:0050794_0.512|GO:0071944_0.506
|
IPR001623+29-87_30-84_30-92_30-95_32-50_50-65_67-87_87-106+|IPR018253+72-91+|IPR036869+15-115_27-134+|IPR051434+29-194+
|
SM00271+29-87+
|
PF00226+30-92+DnaJ_domain
|
— |
PTHR44027+29-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;233-259
|
1.000
|
29-232
|
2ctw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
28583.440
|
7.055
|
2.000
|
23.938
|
10.039
|
44.788
|
55.212
|
12.741
|
11.197
|
58.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
1373.059
|
1643.792
|
1258.526
|
1424.019
|
1884.973
|
2423.363
|
2058.808
|
1344.554
|
839.987
|
862.881
|
853.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.614
|
-0.344
|
0.286
|
0.373
|
0.378
|
-0.227
|
-0.956
|
0.756
|
— | — | — | — | — |
No JSON data available for plots.