Hg_chrom3_TN10mRNA_4516
Organism: Heterodera glycines Gene Locus: chr3:402257-406623 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.9 | 1.245 | 0.411 | 1.488 | 1.297 | 0.319 | 1.19 | 1.124 | 1.247 | 1.218 | 1.576 | 1.405 | 1.03 | 1.276 | 0.68 | 0.781 | 0.722 | 1.374 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4281
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRLQAEQELEDQRKEWKK
|
— | — |
1-22
|
1.000
|
— | — |
0.000
|
— | — |
0.061
|
0.982
|
0.021
|
0.150
|
0.020
|
0.064
|
0.098
|
0.006
|
0.045
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007359
|
1.000
|
1.000
|
Hsc_gene_16557.t1
|
Hsc_gene_16557.t1
|
— |
Q6DFN1.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Xenopus tropicalis]
|
KAI1732938.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.910|GO:0005622_0.882|GO:0016020_0.842|GO:0043226_0.812|GO:0043229_0.799|GO:0005737_0.795|GO:0043227_0.753|GO:0043231_0.742|GO:0008150_0.616|GO:0009987_0.579|GO:0005739_0.562
|
IPR007523+55-205_91-201+|IPR036748+86-204_87-204+
|
— |
PF04430+91-201+Protein_of_unknown_function_(DUF498/DUF598)
|
— |
PTHR21192+55-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
274-336
|
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
38794.280
|
6.319
|
-1.000
|
32.440
|
11.012
|
50.893
|
49.107
|
16.667
|
15.774
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
987.126
|
1264.041
|
911.254
|
860.798
|
1030.118
|
874.617
|
1044.504
|
899.402
|
1101.480
|
910.791
|
992.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.702
|
-0.691
|
— |
0.228
|
-0.222
|
0.267
|
— |
0.359
|
— | — | — | — | — |
No JSON data available for plots.