Hg_chrom3_TN10mRNA_4517
Organism: Heterodera glycines Gene Locus: chr3:407871-417902 Feature type: polypeptideProtein Sequence
Length: 871
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.282 | 0.856 | 0.673 | 1.091 | 1.384 | 0.615 | 1.55 | 1.123 | 1.164 | 1.026 | 1.283 | 1.052 | 0.773 | 1.031 | 1.197 | 0.998 | 0.852 | 0.795 | 0.81 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4282
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKWK,KRNRDQILAEMSKKFKL,KRSTNNGEDFTMSREYKK,KKIFSKLFFAGDIEQVKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.630
|
0.227
|
0.042
|
0.503
|
0.142
|
0.239
|
0.113
|
0.074
|
0.221
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003465
|
1.000
|
2.000
|
Hsc_gene_16559.t1;Hsc_gene_16563.t1
|
Hsc_gene_16558.t1
|
— | — |
KAI1732936.1 GSK3-beta interaction protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0060828
|
— |
IPR007967+745-849+|IPR023231+743-851_743-854+|IPR037395+637-854+
|
— |
PF05303+745-849+GSKIP_domain
|
— |
PTHR12490+637-854+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
557-600
|
2.000
|
1-556;601-871
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
97550.520
|
8.069
|
18.500
|
26.177
|
10.677
|
51.550
|
48.450
|
14.925
|
11.251
|
49.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
967.717
|
1046.807
|
969.336
|
585.665
|
583.096
|
595.517
|
914.853
|
926.026
|
786.436
|
1535.946
|
1214.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
-0.975
|
-0.619
|
— | — |
0.630
|
0.533
|
— | — | — | — | — | — |
No JSON data available for plots.