Hg_chrom3_TN10mRNA_4519
Organism: Heterodera glycines Gene Locus: chr3:425104-426491 Feature type: polypeptideProtein Sequence
Length: 86
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.622 | 0.211 | 2.406 | 0.194 | 1.193 | 0.831 | 1.163 | 0.0 | 1.1 | 1.938 | 0.684 | 1.938 | 1.118 | 0.949 | 0.997 | 0.381 | 1.233 | 2.683 | 0.342 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4284
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_16533;Hsc_gene_23496
|
— |
29-Not_Clustered
|
0.615
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus|extracellular
|
— | — | — | — | — | — |
1-25
|
0.980
|
0.999
|
0.000
|
0.000
|
0.535
|
0.287
|
0.178
|
0.145
|
0.142
|
0.105
|
0.099
|
0.028
|
0.131
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003463
|
2.000
|
1.000
|
Hsc_gene_16565.t1
|
Hsc_gene_16535.t1;Hsc_gene_16565.t1
|
— | — |
XP_060085155.1 tissue factor pathway inhibitor-like [Ylistrum balloti]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.823|GO:0005575_0.710|GO:0110165_0.704|GO:0003674_0.629|GO:0065007_0.608|GO:0005488_0.523|GO:0009987_0.518|GO:0005515_0.508
|
IPR002223+34-85_35-85_36-84+|IPR036880+30-85_34-85+
|
SM00131+34-85+
|
PF00014+35-85+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR47247+16-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-86
|
8aj7_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
9659.380
|
10.745
|
14.000
|
22.093
|
13.953
|
43.023
|
56.977
|
19.767
|
2.326
|
53.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
864.708
|
30.452
|
31.618
|
22.834
|
749.674
|
665.710
|
486.148
|
1520.599
|
1.382
|
2466.924
|
1410.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
5.004
|
— |
-0.448
|
1.085
|
-1.507
|
-11.056
|
4.374
|
— | — | — |